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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1009
total RNA-seq
251
ChIP-seq
239
ATAC-seq
180
single cell RNA-seq
174
DNase-seq
87
RNA microarray
28
snATAC-seq
27
WGBS
21
pCHi-C
16
small RNA-seq
15
Hi-C
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
1205
Transcription
445
DNA accessibility
251
DNA binding
38
DNA methylation
15
3D chromatin structure
Target of assay
histone modification
453
histone
260
broad histone mark
193
narrow histone mark
159
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
229
August, 2021
166
May, 2020
163
June, 2019
160
August, 2017
120
July, 2018
90
February, 2023
77
July, 2019
October, 2019
66
May, 2022
47
September, 2023
44
October, 2018
43
December, 2017
40
May, 2021
40
November, 2019
38
March, 2020
26
May, 2019
26
November, 2018
25
February, 2020
20
April, 2019
19
April, 2020
15
May, 2023
12
November, 2017
11
October, 2017
8
January, 2021
7
December, 2018
6
April, 2018
6
September, 2017
5
March, 2019
5
May, 2024
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
January, 2019
Available data
1399
bam
1235
bigWig
1068
tsv
458
bed narrowPeak
302
fastq
244
bigBed narrowPeak
189
bed bed3+
174
bed broadPeak
172
bigBed broadPeak
157
txt
64
xls
43
tagAlign
25
bed bedMethyl
25
bigBed bedMethyl
10
hic
9
bedpe bed3+
6
csv
bed bed3
1
bedpe
Organism
2066
Homo sapiens
Biosample type
2069
tissue
837
primary cell
578
cell line
269
in vitro differentiated cells
8
stem cell
Organ
513
connective tissue
455
adipose tissue
429
pancreas
290
liver
277
kidney
215
heart
154
bone element
71
blood vessel
71
brain
71
vasculature
57
musculature of body
47
limb
45
artery
35
eye
20
lung
18
spleen
18
ureter
15
epithelium
12
skeleton
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
nerve
1
ovary
1
pericardium
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1974
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
1351
GRCh38
1296
hg19
Lab
1752
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
5
Patrick T. Ellinor, Broad
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
89
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
18
missing controlled_by
files.file_type!
bed bed3
month_released!
January, 2019
October, 2019
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
2069 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
small RNA-seq
Hi-C
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
adipose tissue
382
1
2
3
1
islet of Langerhans
278
20
55
6
1
7
3
1
1
4
liver
166
80
20
1
2
3
1
1
1
1
kidney
49
5
75
64
13
6
1
1
1
bone element
84
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