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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
871
total RNA-seq
252
ATAC-seq
231
ChIP-seq
180
single cell RNA-seq
151
DNase-seq
87
RNA microarray
28
snATAC-seq
27
WGBS
23
pCHi-C
16
Hi-C
12
small RNA-seq
10
RRBS
4
MeRIP-seq
3
FAIRE-seq
3
snDrop-seq
Assay category
1063
Transcription
434
DNA accessibility
231
DNA binding
37
DNA methylation
16
3D chromatin structure
Target of assay
histone modification
416
histone
233
broad histone mark
183
narrow histone mark
139
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
229
August, 2021
May, 2020
160
August, 2017
138
June, 2019
120
July, 2018
90
February, 2023
66
July, 2019
66
May, 2022
65
October, 2019
47
September, 2023
44
October, 2018
43
December, 2017
40
May, 2021
40
November, 2019
36
March, 2020
24
November, 2018
23
May, 2019
20
April, 2019
19
April, 2020
15
May, 2023
13
February, 2020
8
January, 2021
7
December, 2018
7
October, 2017
6
April, 2018
6
September, 2017
5
March, 2019
5
May, 2024
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
1
January, 2019
Available data
1212
bam
1068
bigWig
910
tsv
436
bed narrowPeak
298
fastq
221
bigBed narrowPeak
166
bed bed3+
157
txt
151
bed broadPeak
149
bigBed broadPeak
64
xls
24
bed bedMethyl
24
bigBed bedMethyl
11
hic
10
bedpe bed3+
10
tagAlign
6
csv
bed bed3
1
bedpe
Organism
1895
Homo sapiens
Biosample type
1898
tissue
685
primary cell
622
cell line
277
in vitro differentiated cells
8
stem cell
Organ
514
connective tissue
456
adipose tissue
432
pancreas
279
kidney
218
heart
154
bone element
125
liver
brain
79
blood vessel
79
vasculature
73
limb
57
musculature of body
54
eye
53
artery
20
lung
19
nerve
19
spleen
18
ureter
15
epithelium
12
skeleton
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1803
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
1184
GRCh38
1141
hg19
Lab
1581
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
5
Patrick T. Ellinor, Broad
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
88
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
18
missing controlled_by
files.file_type!
bed bed3
month_released!
May, 2020
organ_slims!
brain
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
1898 results
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Clear Filters
total RNA-seq
ATAC-seq
ChIP-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
Hi-C
small RNA-seq
RRBS
MeRIP-seq
FAIRE-seq
snDrop-seq
tissue
islet of Langerhans
292
67
20
6
1
7
4
3
1
4
1
adipose tissue
382
3
1
3
1
kidney
49
75
7
64
13
6
1
1
1
liver
24
20
57
1
2
3
1
1
1
1
bone element
84
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