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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1024
total RNA-seq
821
ChIP-seq
246
ATAC-seq
180
single cell RNA-seq
141
DNase-seq
87
RNA microarray
28
snATAC-seq
24
WGBS
24
pCHi-C
16
small RNA-seq
12
Hi-C
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
1220
Transcription
821
DNA binding
419
DNA accessibility
35
DNA methylation
12
3D chromatin structure
Target of assay
573
histone modification
572
histone
307
narrow histone mark
265
broad histone mark
162
control
88
transcription factor
28
RNA binding protein
2
chromatin remodeller
2
nucleotide modification
Date released
539
February, 2021
284
August, 2017
229
August, 2021
193
May, 2020
173
October, 2019
131
June, 2019
120
July, 2018
108
May, 2019
90
February, 2023
82
November, 2017
80
April, 2019
74
October, 2018
72
July, 2019
66
May, 2022
48
December, 2017
47
September, 2023
40
May, 2021
40
May, 2024
40
November, 2019
39
March, 2020
22
February, 2020
22
October, 2017
19
April, 2020
17
November, 2018
15
May, 2023
8
January, 2021
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1769
bam
1665
bigWig
1068
tsv
878
bed narrowPeak
464
bigBed narrowPeak
353
fastq
238
tagAlign
176
bed broadPeak
168
bed bed3+
157
txt
139
bigBed broadPeak
64
xls
22
bed bedMethyl
22
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2616
Homo sapiens
Biosample type
2625
tissue
1087
primary cell
661
cell line
389
in vitro differentiated cells
10
stem cell
Organ
547
connective tissue
505
pancreas
488
adipose tissue
361
liver
313
heart
299
kidney
264
brain
154
bone element
133
blood vessel
133
vasculature
limb
82
musculature of body
73
artery
56
eye
43
nerve
spleen
20
lung
18
ureter
15
epithelium
12
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2528
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1747
GRCh38
1640
hg19
Lab
2273
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
90
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
files.file_type!
bed bed3
organ_slims!
limb
spleen
BIOSAMPLE
ASSAY
2625 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
small RNA-seq
Hi-C
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
292
70
68
6
1
7
4
3
1
1
4
adipose tissue
382
2
3
3
1
liver
167
145
20
1
2
3
1
1
1
1
kidney
49
27
75
64
13
6
1
1
1
bone element
84
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