Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1024
total RNA-seq
665
ChIP-seq
222
ATAC-seq
174
single cell RNA-seq
173
DNase-seq
87
RNA microarray
28
snATAC-seq
24
pCHi-C
16
small RNA-seq
10
WGBS
6
Hi-C
4
FAIRE-seq
3
snDrop-seq
2
MeRIP-seq
2
RRBS
Assay category
1214
Transcription
665
DNA binding
427
DNA accessibility
12
DNA methylation
6
3D chromatin structure
Target of assay
574
histone modification
573
histone
306
narrow histone mark
267
broad histone mark
control
91
transcription factor
25
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
250
August, 2017
222
August, 2021
193
October, 2019
170
May, 2020
160
June, 2019
120
July, 2018
70
November, 2017
66
April, 2019
66
May, 2022
60
February, 2023
57
July, 2019
54
May, 2019
47
September, 2023
45
October, 2018
40
May, 2021
40
May, 2024
39
November, 2019
36
December, 2017
31
March, 2020
22
February, 2020
20
October, 2017
19
April, 2020
17
November, 2018
15
May, 2023
8
January, 2021
6
April, 2018
6
January, 2019
5
March, 2019
3
December, 2018
3
December, 2019
2
January, 2018
2
November, 2020
1
August, 2022
Available data
1702
bigWig
1669
bam
1062
tsv
884
bed narrowPeak
499
bigBed narrowPeak
310
fastq
208
bed broadPeak
197
bed bed3+
186
tagAlign
171
bigBed broadPeak
157
txt
64
xls
bed bedMethyl
24
bigBed bedMethyl
10
hic
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2432
Homo sapiens
Biosample type
2440
tissue
1012
primary cell
512
cell line
350
in vitro differentiated cells
9
stem cell
Organ
521
connective tissue
467
pancreas
462
adipose tissue
313
liver
292
kidney
287
heart
239
brain
158
bone element
blood vessel
115
vasculature
104
limb
73
musculature of body
66
artery
56
eye
32
nerve
20
lung
18
ureter
16
skeleton
15
epithelium
15
spleen
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2343
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1736
GRCh38
1665
hg19
Lab
2091
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
3
Bing Ren, UCSD
2
Mark McCarthy, Oxford
2
Rohit N. Kulkarni, M.D., Ph.D.
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
91
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
files.file_type!
bed bedMethyl
bedpe bed3+
organ_slims!
blood vessel
target.investigated_as!
control
BIOSAMPLE
ASSAY
2440 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
pCHi-C
small RNA-seq
WGBS
Hi-C
FAIRE-seq
snDrop-seq
MeRIP-seq
RRBS
tissue
islet of Langerhans
292
58
68
6
1
7
4
1
1
2
adipose tissue
382
1
3
1
1
liver
167
102
20
1
2
1
1
3
kidney
49
21
75
64
13
6
1
1
bone element
84
+ See 169 more…
See all biosamples
Download