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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
834
ChIP-seq
622
total RNA-seq
225
ATAC-seq
180
single cell RNA-seq
176
DNase-seq
86
RNA microarray
23
pCHi-C
18
snATAC-seq
16
Hi-C
14
small RNA-seq
7
WGBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
2
RRBS
Assay category
834
DNA binding
816
Transcription
423
DNA accessibility
16
3D chromatin structure
9
DNA methylation
Target of assay
596
histone modification
595
histone
312
narrow histone mark
283
broad histone mark
163
control
77
transcription factor
23
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
241
October, 2019
228
August, 2021
224
August, 2017
193
May, 2020
162
June, 2019
159
February, 2021
120
July, 2018
115
May, 2019
82
November, 2017
80
April, 2019
76
February, 2023
53
July, 2019
51
October, 2018
48
December, 2017
47
September, 2023
42
May, 2022
40
May, 2024
39
March, 2020
39
November, 2019
38
May, 2021
23
February, 2020
22
October, 2017
19
April, 2020
19
November, 2018
14
May, 2023
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
1
August, 2022
1
January, 2018
Available data
1443
bam
1349
bigWig
953
bed narrowPeak
677
tsv
551
bigBed narrowPeak
310
fastq
230
tagAlign
210
bed broadPeak
199
bed bed3+
174
bigBed broadPeak
151
txt
64
xls
bed bedMethyl
23
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2206
Homo sapiens
Biosample type
2214
tissue
837
primary cell
595
cell line
346
in vitro differentiated cells
10
stem cell
Organ
545
connective tissue
adipose tissue
448
pancreas
360
liver
306
heart
298
kidney
264
brain
158
bone element
132
blood vessel
132
vasculature
121
limb
79
musculature of body
73
artery
56
eye
43
nerve
23
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
2144
AMP
47
KPMP
19
LungMap
4
T1D
Genome assembly (visualization)
1423
GRCh38
1304
hg19
Lab
1914
AMP-T2D consortium
142
Katalin Susztak, Upenn
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
90
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
14
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
files.file_type!
bed bedMethyl
lab.title!
Kyle Gaulton, UCSD
organ_slims!
adipose tissue
blood
BIOSAMPLE
ASSAY
2214 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
pCHi-C
snATAC-seq
Hi-C
small RNA-seq
WGBS
FAIRE-seq
MeRIP-seq
snDrop-seq
RRBS
tissue
islet of Langerhans
71
281
39
6
1
4
1
3
1
4
liver
145
167
20
1
2
1
1
1
3
kidney
27
49
75
64
13
6
1
1
bone element
84
heart left ventricle
35
3
2
18
3
1
1
2
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