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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
867
ChIP-seq
829
total RNA-seq
178
DNase-seq
131
ATAC-seq
113
single cell RNA-seq
87
RNA microarray
24
pCHi-C
16
small RNA-seq
13
Hi-C
11
WGBS
4
FAIRE-seq
3
snDrop-seq
2
RRBS
2
snATAC-seq
Assay category
958
Transcription
867
DNA binding
315
DNA accessibility
13
3D chromatin structure
13
DNA methylation
Target of assay
593
histone modification
592
histone
309
narrow histone mark
283
broad histone mark
185
control
89
transcription factor
23
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
545
February, 2021
279
August, 2017
242
October, 2019
193
May, 2020
163
June, 2019
July, 2018
115
May, 2019
99
August, 2021
82
November, 2017
80
April, 2019
77
February, 2023
74
October, 2018
63
July, 2019
48
December, 2017
40
March, 2020
40
November, 2019
38
May, 2021
25
February, 2020
22
October, 2017
20
November, 2018
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
3
December, 2019
2
January, 2018
2
May, 2022
1
August, 2022
1
May, 2023
Available data
1766
bam
1595
bigWig
959
tsv
842
bed narrowPeak
561
bigBed narrowPeak
349
fastq
238
tagAlign
211
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
94
txt
bed bedMethyl
25
bigBed bedMethyl
9
bedpe bed3+
9
hic
6
csv
5
bed bed3
1
tagAlign bed3+
Organism
2272
Homo sapiens
Biosample type
2280
tissue
614
cell line
466
primary cell
340
in vitro differentiated cells
8
stem cell
Organ
545
connective tissue
486
adipose tissue
320
liver
316
pancreas
266
heart
264
brain
158
bone element
132
blood vessel
132
vasculature
121
limb
109
kidney
79
musculature of body
73
artery
56
eye
43
nerve
23
spleen
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lung
1
lymph node
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
2276
AMP
4
T1D
Genome assembly (visualization)
1609
GRCh38
1587
hg19
Lab
2280
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
91
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
files.file_type!
bed bedMethyl
lab.title!
Karen Mohlke, UNC
month_released!
July, 2018
BIOSAMPLE
ASSAY
2280 results
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ChIP-seq
total RNA-seq
DNase-seq
ATAC-seq
single cell RNA-seq
RNA microarray
pCHi-C
small RNA-seq
Hi-C
WGBS
FAIRE-seq
snDrop-seq
RRBS
snATAC-seq
tissue
adipose tissue
2
382
3
1
1
liver
145
147
2
1
1
1
1
3
islet of Langerhans
71
160
1
34
6
4
1
1
1
bone element
84
heart left ventricle
35
3
3
2
18
1
1
2
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