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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
750
ChIP-seq
679
total RNA-seq
171
DNase-seq
107
single cell RNA-seq
103
ATAC-seq
87
RNA microarray
23
pCHi-C
14
small RNA-seq
11
Hi-C
11
WGBS
3
snDrop-seq
2
FAIRE-seq
2
RRBS
1
snATAC-seq
Assay category
800
Transcription
750
DNA binding
277
DNA accessibility
13
DNA methylation
11
3D chromatin structure
Target of assay
520
histone modification
519
histone
277
narrow histone mark
242
broad histone mark
158
control
72
transcription factor
15
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
545
February, 2021
239
October, 2019
193
May, 2020
159
June, 2019
132
August, 2017
113
May, 2019
99
August, 2021
82
November, 2017
80
April, 2019
77
February, 2023
59
July, 2019
48
December, 2017
31
March, 2020
24
February, 2020
23
October, 2018
18
October, 2017
17
November, 2018
7
December, 2018
7
January, 2019
3
December, 2019
2
January, 2018
2
May, 2021
2
May, 2022
1
May, 2023
1
November, 2019
Available data
1478
bam
1339
bigWig
801
tsv
737
bed narrowPeak
499
bigBed narrowPeak
222
tagAlign
193
bed broadPeak
178
bed bed3+
170
bigBed broadPeak
164
fastq
94
txt
bed bedMethyl
19
bigBed bedMethyl
7
bedpe bed3+
7
hic
6
csv
5
bed bed3
1
tagAlign bed3+
Organism
1963
Homo sapiens
Biosample type
1964
tissue
528
cell line
337
in vitro differentiated cells
309
primary cell
8
stem cell
Organ
545
connective tissue
486
adipose tissue
320
liver
pancreas
266
heart
264
brain
158
bone element
132
blood vessel
132
vasculature
121
limb
109
kidney
79
musculature of body
73
artery
56
eye
43
nerve
23
spleen
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lung
1
lymph node
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
1964
AMP
Genome assembly (visualization)
1346
GRCh38
1314
hg19
Lab
1964
AMP-T2D consortium
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
1
Kyle Gaulton, UCSD
Audit category:
91
inconsistent ontology term
27
inconsistent control
8
audit script error
Audit category:
16
missing controlled_by
Audit category:
1
inconsistent control read length
files.file_type!
bed bedMethyl
month_released!
July, 2018
organ_slims!
pancreas
BIOSAMPLE
ASSAY
1964 results
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Clear Filters
ChIP-seq
total RNA-seq
DNase-seq
single cell RNA-seq
ATAC-seq
RNA microarray
pCHi-C
small RNA-seq
Hi-C
WGBS
snDrop-seq
FAIRE-seq
RRBS
snATAC-seq
tissue
adipose tissue
2
382
3
1
1
liver
145
147
2
1
1
1
1
3
bone element
84
heart left ventricle
35
3
3
18
2
1
1
2
bone tissue
58
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