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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
127
ChIP-seq
27
DNase-seq
5
total RNA-seq
4
ATAC-seq
4
small RNA-seq
2
pCHi-C
1
FAIRE-seq
Assay category
127
DNA binding
32
DNA accessibility
9
Transcription
Target of assay
114
histone
114
histone modification
86
narrow histone mark
28
broad histone mark
13
control
Date released
86
October, 2019
November, 2017
28
May, 2019
25
June, 2019
16
October, 2017
February, 2020
10
July, 2019
2
March, 2020
2
November, 2018
1
February, 2023
Available data
157
bam
145
bigWig
134
bed narrowPeak
59
bigBed narrowPeak
52
tagAlign
30
bed broadPeak
27
bed bed3+
27
bigBed broadPeak
12
fastq
11
tsv
1
bed bed3
bed bedMethyl
1
bigBed bedMethyl
1
tagAlign bed3+
Organism
170
Homo sapiens
Biosample type
170
tissue
11
primary cell
Organ
543
connective tissue
498
pancreas
484
adipose tissue
359
liver
303
heart
298
kidney
170
brain
158
bone element
129
blood vessel
129
vasculature
118
limb
77
musculature of body
71
artery
55
eye
42
nerve
23
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
170
AMP
Genome assembly (visualization)
146
GRCh38
136
hg19
Lab
170
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
4
missing controlled_by
files.file_type!
bed bedMethyl
month_released!
February, 2020
November, 2017
BIOSAMPLE
ASSAY
170 results
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ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
small RNA-seq
pCHi-C
FAIRE-seq
tissue
brain
20
14
1
1
temporal lobe
15
1
1
angular gyrus
15
cerebellum (Hemisphere)
2
1
1
1
frontal cortex
2
1
1
1
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