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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
907
ChIP-seq
587
total RNA-seq
251
ATAC-seq
174
single cell RNA-seq
28
snATAC-seq
25
pCHi-C
16
Hi-C
16
small RNA-seq
15
DNase-seq
11
WGBS
4
FAIRE-seq
4
MeRIP-seq
3
RNA microarray
2
RRBS
Assay category
907
DNA binding
777
Transcription
298
DNA accessibility
16
3D chromatin structure
13
DNA methylation
Target of assay
628
histone modification
627
histone
324
narrow histone mark
303
broad histone mark
187
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
February, 2021
279
August, 2017
241
October, 2019
229
August, 2021
193
May, 2020
June, 2019
120
July, 2018
115
May, 2019
95
February, 2023
82
November, 2017
80
April, 2019
74
October, 2018
66
May, 2022
63
July, 2019
48
December, 2017
47
September, 2023
40
March, 2020
40
May, 2021
40
May, 2024
40
November, 2019
25
February, 2020
23
October, 2017
20
November, 2018
19
April, 2020
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1292
bam
1165
bigWig
813
bed narrowPeak
624
tsv
398
bigBed narrowPeak
377
fastq
238
tagAlign
68
txt
64
xls
50
bed broadPeak
42
bed bed3+
bed bedMethyl
25
bigBed bedMethyl
13
bigBed broadPeak
11
hic
10
bedpe bed3+
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2034
Homo sapiens
Biosample type
2043
tissue
975
primary cell
565
cell line
368
in vitro differentiated cells
10
stem cell
Organ
495
pancreas
359
liver
279
heart
239
brain
222
kidney
129
blood vessel
129
vasculature
100
connective tissue
99
adipose tissue
83
limb
71
artery
53
eye
47
musculature of body
43
nerve
23
spleen
20
lung
15
epithelium
8
bone element
8
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1946
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1228
GRCh38
1147
hg19
Lab
1691
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
6
inconsistent ontology term
4
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
files.file_type!
bed bedMethyl
month_released!
February, 2021
June, 2019
organ_slims!
skin of body
BIOSAMPLE
ASSAY
2043 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
pCHi-C
Hi-C
small RNA-seq
DNase-seq
WGBS
FAIRE-seq
MeRIP-seq
RNA microarray
RRBS
tissue
islet of Langerhans
71
292
67
6
7
4
3
1
1
4
liver
145
167
20
1
1
1
2
3
kidney
27
49
75
59
6
1
1
heart left ventricle
35
3
2
18
1
1
2
left cardiac atrium
40
18
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