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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1003
total RNA-seq
878
ChIP-seq
185
ATAC-seq
177
single cell RNA-seq
174
DNase-seq
87
RNA microarray
27
snATAC-seq
25
pCHi-C
16
Hi-C
16
small RNA-seq
11
WGBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
2
RRBS
Assay category
1196
Transcription
878
DNA binding
390
DNA accessibility
16
3D chromatin structure
13
DNA methylation
Target of assay
607
histone modification
606
histone
317
narrow histone mark
289
broad histone mark
180
control
93
transcription factor
27
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
279
August, 2017
227
August, 2021
215
October, 2019
193
May, 2020
161
June, 2019
120
July, 2018
110
May, 2019
82
November, 2017
80
April, 2019
74
October, 2018
May, 2022
62
July, 2019
60
February, 2023
48
December, 2017
47
September, 2023
40
March, 2020
40
May, 2021
40
May, 2024
40
November, 2019
23
February, 2020
23
October, 2017
20
November, 2018
19
April, 2020
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1849
bam
1725
bigWig
1072
tsv
884
bed narrowPeak
536
bigBed narrowPeak
353
fastq
238
tagAlign
209
bed broadPeak
200
bed bed3+
172
bigBed broadPeak
150
txt
64
xls
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2603
Homo sapiens
Biosample type
2612
tissue
942
primary cell
595
cell line
394
in vitro differentiated cells
10
stem cell
Organ
545
connective tissue
486
adipose tissue
475
pancreas
320
liver
306
heart
298
kidney
264
brain
158
bone element
132
blood vessel
132
vasculature
121
limb
77
musculature of body
artery
56
eye
43
nerve
23
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
lymph node
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2515
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1781
GRCh38
1680
hg19
Lab
2324
AMP-T2D consortium
142
Katalin Susztak, Upenn
47
KPMP
40
Patrick T. Ellinor, Broad
28
Kyle Gaulton, UCSD
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
91
inconsistent ontology term
27
inconsistent control
8
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
files.file_type!
bed bedMethyl
month_released!
May, 2022
organ_slims!
artery
lymph node
BIOSAMPLE
ASSAY
2612 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
pCHi-C
Hi-C
small RNA-seq
WGBS
FAIRE-seq
MeRIP-seq
snDrop-seq
RRBS
tissue
islet of Langerhans
286
70
50
6
1
7
4
3
1
4
adipose tissue
382
2
3
1
1
liver
147
145
1
2
1
1
1
3
kidney
49
27
75
64
13
6
1
1
bone element
84
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