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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
194
ChIP-seq
27
DNase-seq
21
total RNA-seq
15
ATAC-seq
4
small RNA-seq
2
pCHi-C
1
FAIRE-seq
Assay category
194
DNA binding
43
DNA accessibility
25
Transcription
Target of assay
172
histone
172
histone modification
112
narrow histone mark
60
broad histone mark
22
control
Date released
86
October, 2019
82
November, 2017
28
May, 2019
25
June, 2019
October, 2017
12
February, 2020
10
July, 2019
9
February, 2023
8
February, 2021
2
March, 2020
2
November, 2018
Available data
225
bam
195
bigWig
194
bed narrowPeak
110
bigBed narrowPeak
104
tagAlign
33
bed broadPeak
27
bed bed3+
27
bigBed broadPeak
23
tsv
5
bed bed3
4
txt
2
fastq
bed bedMethyl
1
bigBed bedMethyl
1
tagAlign bed3+
Organism
264
Homo sapiens
Biosample type
264
tissue
20
primary cell
Organ
544
connective tissue
494
pancreas
485
adipose tissue
360
liver
306
heart
298
kidney
248
brain
158
bone element
132
blood vessel
132
vasculature
121
limb
79
musculature of body
73
artery
56
eye
43
nerve
22
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
264
AMP
Genome assembly (visualization)
204
GRCh38
148
hg19
Lab
264
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
files.file_type!
bed bedMethyl
month_released!
October, 2017
BIOSAMPLE
ASSAY
264 results
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ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
small RNA-seq
pCHi-C
FAIRE-seq
tissue
layer of hippocampus
23
brain
5
14
1
1
caudate nucleus
15
1
1
substantia nigra
16
1
temporal lobe
15
1
1
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