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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
70
ChIP-seq
38
ATAC-seq
7
total RNA-seq
6
single cell RNA-seq
5
DNase-seq
1
Hi-C
1
WGBS
1
pCHi-C
Assay category
70
DNA binding
43
DNA accessibility
13
Transcription
1
3D chromatin structure
1
DNA methylation
Target of assay
54
histone
54
histone modification
36
broad histone mark
18
narrow histone mark
16
control
3
RNA binding protein
transcription factor
Date released
47
May, 2019
35
February, 2023
26
October, 2019
6
August, 2021
6
July, 2019
3
February, 2020
3
June, 2019
3
March, 2020
Available data
97
bed narrowPeak
84
bam
67
bigWig
59
bigBed narrowPeak
14
tsv
5
bed bed3+
5
bed broadPeak
5
bigBed broadPeak
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hic
Organism
129
Homo sapiens
Biosample type
129
tissue
62
cell line
34
primary cell
Organ
528
connective tissue
482
pancreas
469
adipose tissue
321
liver
297
kidney
294
heart
264
brain
158
bone element
129
blood vessel
129
vasculature
121
limb
79
musculature of body
72
artery
56
eye
43
nerve
20
lung
18
ureter
17
spleen
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
129
AMP
Genome assembly (visualization)
101
GRCh38
67
hg19
Lab
129
AMP-T2D consortium
files.file_type!
bed bedMethyl
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
129 results
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ChIP-seq
ATAC-seq
total RNA-seq
single cell RNA-seq
DNase-seq
Hi-C
WGBS
pCHi-C
tissue
coronary artery
4
36
1
2
tibial artery
23
1
1
2
aorta
13
1
4
1
1
1
ascending aorta
15
2
1
thoracic aorta
15
1
2
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