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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
54
ChIP-seq
4
WGBS
3
total RNA-seq
2
ATAC-seq
1
RNA microarray
1
pCHi-C
Assay category
54
DNA binding
4
DNA methylation
3
Transcription
2
DNA accessibility
Target of assay
30
histone
30
histone modification
24
control
20
broad histone mark
10
narrow histone mark
Date released
40
August, 2017
18
October, 2018
2
February, 2020
1
August, 2021
1
February, 2023
1
March, 2020
1
May, 2023
1
November, 2019
Available data
440
bam
bigWig
399
tsv
43
fastq
13
bed narrowPeak
10
bigBed narrowPeak
8
tagAlign
6
bed bed3+
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
Organism
64
Homo sapiens
Biosample type
65
tissue
1
in vitro differentiated cells
Organ
208
kidney
156
heart
131
pancreas
100
bone element
96
liver
66
connective tissue
65
adipose tissue
63
blood vessel
63
brain
63
vasculature
53
eye
46
artery
31
limb
25
musculature of body
20
lung
16
skeleton
15
epithelium
12
nerve
9
spleen
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
65
AMP
Genome assembly (visualization)
3
hg19
2
GRCh38
Lab
65
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
files.file_type!
bed broadPeak
bigWig
BIOSAMPLE
ASSAY
65 results
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ChIP-seq
WGBS
total RNA-seq
ATAC-seq
RNA microarray
pCHi-C
tissue
subcutaneous abdominal adipose tissue
35
3
subcutaneous adipose tissue
10
1
1
omental fat pad
8
1
adipose tissue
1
1
1
1
1
adipose tissue(adipose white tissue)
1
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