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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
929
total RNA-seq
645
ChIP-seq
230
ATAC-seq
173
single cell RNA-seq
87
RNA microarray
27
snATAC-seq
24
pCHi-C
16
WGBS
15
small RNA-seq
10
Hi-C
6
RRBS
4
MeRIP-seq
3
snDrop-seq
2
FAIRE-seq
1
DNase-seq
Assay category
1117
Transcription
645
DNA binding
260
DNA accessibility
22
DNA methylation
10
3D chromatin structure
Target of assay
516
histone
516
histone modification
280
narrow histone mark
236
broad histone mark
116
control
15
transcription factor
13
RNA binding protein
2
nucleotide modification
Date released
545
February, 2021
238
October, 2019
229
August, 2021
193
May, 2020
118
July, 2018
108
May, 2019
95
February, 2023
80
April, 2019
78
August, 2017
76
November, 2017
70
July, 2019
47
September, 2023
40
May, 2021
40
May, 2022
40
May, 2024
40
November, 2019
35
March, 2020
23
February, 2020
19
April, 2020
16
October, 2018
15
May, 2023
8
January, 2021
6
October, 2017
4
March, 2019
4
November, 2020
3
December, 2019
1
August, 2022
1
January, 2018
Available data
1863
bam
1715
bigWig
1069
tsv
933
bed narrowPeak
523
bigBed narrowPeak
fastq
223
tagAlign
172
bed bed3+
bed broadPeak
156
txt
144
bigBed broadPeak
64
xls
22
bed bedMethyl
22
bigBed bedMethyl
9
hic
8
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2170
Homo sapiens
Biosample type
2172
tissue
619
primary cell
253
in vitro differentiated cells
234
cell line
6
stem cell
Organ
502
connective tissue
443
adipose tissue
286
heart
282
pancreas
278
liver
231
kidney
222
brain
158
bone element
128
blood vessel
128
vasculature
86
limb
69
artery
53
eye
41
nerve
musculature of body
20
lung
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
2075
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1397
GRCh38
1270
hg19
Lab
1846
AMP-T2D consortium
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
28
Kyle Gaulton, UCSD
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
90
inconsistent ontology term
8
audit script error
files.file_type!
bed broadPeak
fastq
organ_slims!
musculature of body
vein
BIOSAMPLE
ASSAY
2172 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
RNA microarray
snATAC-seq
pCHi-C
WGBS
small RNA-seq
Hi-C
RRBS
MeRIP-seq
snDrop-seq
FAIRE-seq
DNase-seq
tissue
adipose tissue
382
3
1
islet of Langerhans
195
37
48
7
4
3
1
4
liver
167
78
20
1
1
2
1
1
kidney
49
27
75
64
6
1
1
1
bone element
84
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