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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1031
total RNA-seq
547
ChIP-seq
258
ATAC-seq
180
single cell RNA-seq
87
RNA microarray
28
snATAC-seq
27
WGBS
25
pCHi-C
16
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
2
DNase-seq
Assay category
1227
Transcription
547
DNA binding
292
DNA accessibility
38
DNA methylation
16
3D chromatin structure
Target of assay
407
histone modification
406
histone
205
broad histone mark
201
narrow histone mark
94
control
48
transcription factor
15
RNA binding protein
3
other context
3
other post-translational modification
2
nucleotide modification
Date released
545
February, 2021
229
August, 2021
225
August, 2017
189
October, 2019
143
May, 2020
120
July, 2018
115
May, 2019
95
February, 2023
80
April, 2019
77
July, 2019
October, 2018
66
May, 2022
December, 2017
47
September, 2023
40
March, 2020
40
May, 2021
40
May, 2024
40
November, 2019
25
February, 2020
19
April, 2020
17
November, 2018
16
November, 2017
15
May, 2023
8
January, 2021
8
October, 2017
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
4
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1785
bam
1691
bigWig
1076
tsv
903
bed narrowPeak
480
bigBed narrowPeak
271
fastq
tagAlign
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2237
Homo sapiens
Biosample type
2239
tissue
948
primary cell
594
cell line
310
in vitro differentiated cells
7
stem cell
Organ
514
connective tissue
455
adipose tissue
430
pancreas
286
heart
240
liver
231
kidney
158
bone element
128
blood vessel
128
vasculature
120
brain
86
limb
69
artery
53
eye
41
nerve
35
musculature of body
24
spleen
20
lung
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2142
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1485
GRCh38
1408
hg19
Lab
1889
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
90
inconsistent ontology term
9
audit script error
Audit category:
22
missing controlled_by
Audit category:
5
inconsistent control read length
files.file_type!
bed broadPeak
tagAlign
month_released!
December, 2017
October, 2018
BIOSAMPLE
ASSAY
2239 results
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total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
Hi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
DNase-seq
tissue
islet of Langerhans
292
62
66
6
7
4
3
1
1
4
1
adipose tissue
382
2
3
3
1
liver
167
37
20
1
3
1
1
1
1
kidney
49
27
75
64
6
1
1
1
bone element
84
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