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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
283
total RNA-seq
105
ChIP-seq
60
ATAC-seq
11
snATAC-seq
6
single cell RNA-seq
4
Hi-C
4
MeRIP-seq
4
WGBS
2
FAIRE-seq
2
RRBS
2
small RNA-seq
1
DNase-seq
1
pCHi-C
Assay category
291
Transcription
105
DNA binding
74
DNA accessibility
6
DNA methylation
4
3D chromatin structure
Target of assay
61
histone
61
histone modification
33
broad histone mark
29
control
28
narrow histone mark
17
transcription factor
8
RNA binding protein
2
nucleotide modification
Date released
135
August, 2017
120
July, 2018
51
October, 2018
39
November, 2019
37
May, 2021
24
May, 2022
18
February, 2023
9
March, 2020
8
January, 2021
6
April, 2018
6
July, 2019
6
September, 2017
5
November, 2018
4
March, 2019
4
November, 2020
4
October, 2017
3
October, 2019
2
August, 2021
2
May, 2019
1
August, 2022
1
February, 2020
Available data
429
bam
373
bigWig
275
tsv
213
fastq
123
bed narrowPeak
62
bigBed narrowPeak
27
bed bed3+
bed broadPeak
16
tagAlign
6
bed bedMethyl
6
bigBed bedMethyl
6
bigBed broadPeak
6
txt
3
bedpe bed3+
3
hic
1
bedpe
Organism
484
Homo sapiens
Biosample type
485
tissue
346
primary cell
91
cell line
3
in vitro differentiated cells
Organ
543
connective tissue
485
pancreas
484
adipose tissue
358
liver
286
heart
229
brain
217
kidney
158
bone element
128
blood vessel
128
vasculature
86
limb
69
artery
53
eye
41
nerve
37
musculature of body
24
spleen
20
lung
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
455
AMP
30
T1D
Genome assembly (visualization)
396
hg19
373
GRCh38
Lab
424
AMP-T2D consortium
51
Kyle Gaulton, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
1
audit script error
Audit category:
10
missing controlled_by
Audit category:
5
inconsistent control read length
files.file_type!
bed broadPeak
month_released!
May, 2023
BIOSAMPLE
ASSAY
485 results
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total RNA-seq
ChIP-seq
ATAC-seq
snATAC-seq
single cell RNA-seq
Hi-C
MeRIP-seq
WGBS
FAIRE-seq
RRBS
small RNA-seq
DNase-seq
pCHi-C
tissue
islet of Langerhans
278
44
56
7
6
3
4
1
1
1
body of pancreas
3
35
4
2
2
pancreas
2
10
4
1
2
1
1
1
endocrine pancreas
16
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