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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1016
total RNA-seq
287
ChIP-seq
87
RNA microarray
87
single cell RNA-seq
50
ATAC-seq
28
snATAC-seq
22
pCHi-C
19
WGBS
15
small RNA-seq
13
Hi-C
10
RRBS
4
MeRIP-seq
3
snDrop-seq
1
DNase-seq
Assay category
1118
Transcription
287
DNA binding
79
DNA accessibility
29
DNA methylation
13
3D chromatin structure
Target of assay
168
control
102
histone
102
histone modification
57
narrow histone mark
45
broad histone mark
19
transcription factor
2
RNA binding protein
2
nucleotide modification
Date released
537
February, 2021
218
August, 2017
166
May, 2020
120
July, 2018
88
October, 2019
73
August, 2021
54
July, 2019
47
September, 2023
38
May, 2021
31
February, 2023
31
March, 2020
29
October, 2018
28
May, 2022
24
November, 2017
22
February, 2020
20
November, 2019
19
April, 2020
16
May, 2019
15
May, 2023
12
December, 2017
October, 2017
9
November, 2018
8
January, 2021
6
April, 2018
6
September, 2017
5
April, 2019
5
March, 2019
4
December, 2018
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
1
January, 2019
Available data
1760
bam
1601
bigWig
965
tsv
bed narrowPeak
467
bigBed narrowPeak
360
fastq
224
tagAlign
182
bed broadPeak
178
bed bed3+
157
txt
bigBed broadPeak
64
xls
18
bed bedMethyl
18
bigBed bedMethyl
8
hic
7
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1639
Homo sapiens
Biosample type
1642
tissue
784
primary cell
261
in vitro differentiated cells
198
cell line
8
stem cell
Organ
534
connective tissue
475
adipose tissue
381
pancreas
248
liver
150
bone element
146
kidney
heart
63
brain
33
blood vessel
33
vasculature
31
musculature of body
30
limb
26
eye
20
lung
16
nerve
11
artery
11
spleen
8
skeleton
5
gonad
5
ovary
3
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1547
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
960
hg19
955
GRCh38
Lab
1433
AMP-T2D consortium
78
Katalin Susztak, Upenn
47
KPMP
34
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
Audit category:
87
inconsistent ontology term
9
audit script error
Audit category:
21
missing controlled_by
files.file_type!
bed narrowPeak
bigBed broadPeak
month_released!
October, 2017
organ_slims!
heart
BIOSAMPLE
ASSAY
1642 results
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Clear Filters
total RNA-seq
ChIP-seq
RNA microarray
single cell RNA-seq
ATAC-seq
snATAC-seq
pCHi-C
WGBS
small RNA-seq
Hi-C
RRBS
MeRIP-seq
snDrop-seq
DNase-seq
tissue
islet of Langerhans
292
51
6
30
7
4
3
1
4
adipose tissue
382
1
2
1
3
liver
167
63
1
1
3
1
1
1
kidney
49
7
64
11
6
1
1
bone element
84
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