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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
949
total RNA-seq
215
ChIP-seq
113
single cell RNA-seq
87
RNA microarray
27
WGBS
25
ATAC-seq
23
pCHi-C
16
small RNA-seq
13
Hi-C
11
RRBS
3
snDrop-seq
2
snATAC-seq
1
DNase-seq
Assay category
1078
Transcription
215
DNA binding
38
DNA methylation
28
DNA accessibility
13
3D chromatin structure
Target of assay
133
control
63
histone
63
histone modification
37
narrow histone mark
26
broad histone mark
19
transcription factor
2
RNA binding protein
Date released
537
February, 2021
185
August, 2017
143
May, 2020
120
July, 2018
99
August, 2021
78
October, 2019
70
July, 2019
38
May, 2021
37
March, 2020
29
October, 2018
25
February, 2020
22
May, 2019
20
November, 2019
15
April, 2019
14
February, 2023
12
December, 2017
9
November, 2018
6
April, 2018
6
September, 2017
4
December, 2018
4
November, 2017
3
December, 2019
2
January, 2018
2
May, 2022
2
October, 2017
1
August, 2022
1
January, 2019
1
May, 2023
Available data
1882
bam
1711
bigWig
1074
tsv
bed narrowPeak
561
bigBed narrowPeak
351
fastq
tagAlign
211
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
94
txt
25
bed bedMethyl
25
bigBed bedMethyl
9
bedpe bed3+
9
hic
6
csv
5
bed bed3
1
tagAlign bed3+
Organism
1484
Homo sapiens
Biosample type
1485
tissue
341
primary cell
219
cell line
190
in vitro differentiated cells
6
stem cell
Organ
527
connective tissue
468
adipose tissue
333
pancreas
185
liver
150
bone element
140
heart
38
brain
33
blood vessel
33
vasculature
30
limb
29
musculature of body
26
eye
21
kidney
16
nerve
11
artery
11
spleen
8
skeleton
5
gonad
ovary
3
epithelium
2
intestine
1
adrenal gland
1
esophagus
1
large intestine
1
lung
1
lymph node
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
1483
AMP
2
T1D
Genome assembly (visualization)
973
hg19
962
GRCh38
Lab
1485
AMP-T2D consortium
78
Katalin Susztak, Upenn
47
KPMP
34
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
87
inconsistent ontology term
9
audit script error
Audit category:
21
missing controlled_by
files.file_type!
bed narrowPeak
tagAlign
organ_slims!
ovary
BIOSAMPLE
ASSAY
1485 results
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Clear Filters
total RNA-seq
ChIP-seq
single cell RNA-seq
RNA microarray
WGBS
ATAC-seq
pCHi-C
small RNA-seq
Hi-C
RRBS
snDrop-seq
snATAC-seq
DNase-seq
tissue
adipose tissue
382
1
3
2
1
islet of Langerhans
280
44
6
15
4
1
1
1
liver
147
20
1
3
1
1
1
1
bone element
84
bone tissue
58
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