Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
969
total RNA-seq
312
ChIP-seq
171
single cell RNA-seq
48
ATAC-seq
27
WGBS
25
pCHi-C
18
snATAC-seq
16
Hi-C
16
small RNA-seq
11
RRBS
4
MeRIP-seq
3
RNA microarray
3
snDrop-seq
1
DNase-seq
Assay category
1156
Transcription
312
DNA binding
67
DNA accessibility
38
DNA methylation
16
3D chromatin structure
Target of assay
187
control
108
histone
108
histone modification
58
narrow histone mark
50
broad histone mark
19
transcription factor
2
RNA binding protein
2
nucleotide modification
Date released
395
February, 2021
218
August, 2017
166
May, 2020
165
August, 2021
120
July, 2018
91
October, 2019
70
July, 2019
47
September, 2023
40
May, 2021
38
March, 2020
29
October, 2018
28
May, 2022
25
February, 2020
24
February, 2023
24
November, 2017
22
May, 2019
20
November, 2019
15
April, 2019
15
May, 2023
12
December, 2017
11
October, 2017
9
November, 2018
8
January, 2021
6
April, 2018
6
September, 2017
5
March, 2019
4
December, 2018
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
1
January, 2019
Available data
1841
bam
1714
bigWig
1018
tsv
bed narrowPeak
561
bigBed narrowPeak
377
fastq
238
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
69
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
1
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1622
Homo sapiens
Biosample type
1624
tissue
792
primary cell
262
in vitro differentiated cells
258
cell line
8
stem cell
Organ
534
connective tissue
475
adipose tissue
382
pancreas
248
liver
bone element
146
kidney
140
heart
73
brain
33
blood vessel
33
vasculature
31
musculature of body
30
limb
26
eye
16
nerve
11
artery
11
spleen
8
skeleton
5
gonad
5
ovary
3
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lung
1
lymph node
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1548
AMP
47
KPMP
29
T1D
Genome assembly (visualization)
918
GRCh38
916
hg19
Lab
1433
AMP-T2D consortium
78
Katalin Susztak, Upenn
47
KPMP
34
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
9
audit script error
3
inconsistent ontology term
Audit category:
22
missing controlled_by
files.file_type!
bed narrowPeak
lab.title!
Xin Sun, UCSD
organ_slims!
bone element
BIOSAMPLE
ASSAY
1624 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
single cell RNA-seq
ATAC-seq
WGBS
pCHi-C
snATAC-seq
Hi-C
small RNA-seq
RRBS
MeRIP-seq
RNA microarray
snDrop-seq
DNase-seq
tissue
islet of Langerhans
292
51
6
31
4
7
3
1
4
adipose tissue
382
1
2
3
1
liver
167
63
1
3
1
1
1
1
kidney
49
7
64
11
6
1
1
subcutaneous abdominal adipose tissue
35
3
+ See 86 more…
See all biosamples
Download