Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
941
total RNA-seq
198
ChIP-seq
177
single cell RNA-seq
87
RNA microarray
41
ATAC-seq
28
snATAC-seq
25
pCHi-C
18
WGBS
16
Hi-C
16
small RNA-seq
6
RRBS
4
MeRIP-seq
3
snDrop-seq
Assay category
1134
Transcription
198
DNA binding
69
DNA accessibility
24
DNA methylation
16
3D chromatin structure
Target of assay
158
control
41
histone
41
histone modification
32
narrow histone mark
9
broad histone mark
2
nucleotide modification
1
RNA binding protein
1
transcription factor
Date released
537
February, 2021
August, 2017
166
May, 2020
165
August, 2021
120
July, 2018
91
October, 2019
70
July, 2019
47
September, 2023
40
May, 2021
38
March, 2020
32
February, 2023
29
October, 2018
28
May, 2022
25
February, 2020
24
November, 2017
22
May, 2019
20
November, 2019
19
April, 2020
15
April, 2019
May, 2023
12
December, 2017
11
October, 2017
9
November, 2018
8
January, 2021
6
April, 2018
6
September, 2017
5
March, 2019
4
December, 2018
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
1
January, 2019
Available data
1737
bam
1594
bigWig
987
tsv
bed narrowPeak
539
bigBed narrowPeak
202
fastq
187
bed broadPeak
179
bed bed3+
179
tagAlign
176
bigBed broadPeak
157
txt
64
xls
20
bed bedMethyl
20
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1558
Homo sapiens
Biosample type
1560
tissue
767
primary cell
258
cell line
214
in vitro differentiated cells
8
stem cell
Organ
479
connective tissue
420
adipose tissue
267
pancreas
212
liver
150
bone element
140
heart
132
kidney
73
brain
33
blood vessel
33
vasculature
30
limb
26
eye
20
lung
18
musculature of body
16
nerve
11
artery
11
spleen
8
skeleton
5
gonad
5
ovary
3
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1465
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
863
hg19
851
GRCh38
Lab
1364
AMP-T2D consortium
64
Katalin Susztak, Upenn
47
KPMP
34
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
87
inconsistent ontology term
9
audit script error
Audit category:
1
missing controlled_by
files.file_type!
bed narrowPeak
month_released!
August, 2017
February, 2018
May, 2023
BIOSAMPLE
ASSAY
1560 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
single cell RNA-seq
RNA microarray
ATAC-seq
snATAC-seq
pCHi-C
WGBS
Hi-C
small RNA-seq
RRBS
MeRIP-seq
snDrop-seq
tissue
adipose tissue
381
2
1
islet of Langerhans
203
27
6
31
7
4
3
1
4
liver
167
32
1
1
1
1
kidney
49
7
61
6
1
1
bone element
84
+ See 90 more…
See all biosamples
Download