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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
863
total RNA-seq
180
single cell RNA-seq
153
ChIP-seq
44
ATAC-seq
28
snATAC-seq
23
pCHi-C
18
WGBS
16
Hi-C
12
small RNA-seq
5
RRBS
4
MeRIP-seq
3
RNA microarray
3
snDrop-seq
Assay category
1055
Transcription
153
DNA binding
72
DNA accessibility
23
DNA methylation
16
3D chromatin structure
Target of assay
133
control
21
histone
21
histone modification
21
narrow histone mark
2
nucleotide modification
1
RNA binding protein
1
transcription factor
Date released
395
February, 2021
August, 2017
166
May, 2020
165
August, 2021
120
July, 2018
80
October, 2019
60
July, 2019
47
September, 2023
40
May, 2021
36
March, 2020
29
October, 2018
28
May, 2022
23
February, 2023
20
November, 2019
19
April, 2020
19
May, 2019
15
April, 2019
15
May, 2023
13
February, 2020
12
December, 2017
9
November, 2018
8
January, 2021
6
April, 2018
6
September, 2017
5
March, 2019
4
December, 2018
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
1
January, 2019
1
October, 2017
Available data
1445
bam
1334
bigWig
906
tsv
bed narrowPeak
423
bigBed narrowPeak
190
fastq
152
bed bed3+
151
bed broadPeak
149
bigBed broadPeak
69
txt
64
xls
61
tagAlign
19
bed bedMethyl
19
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
1
bedpe
Organism
1350
Homo sapiens
Biosample type
1352
tissue
756
primary cell
258
cell line
237
in vitro differentiated cells
8
stem cell
Organ
480
connective tissue
421
adipose tissue
267
pancreas
212
liver
bone element
146
kidney
140
heart
brain
33
blood vessel
33
vasculature
30
limb
26
eye
20
lung
18
musculature of body
16
nerve
11
artery
11
spleen
8
skeleton
5
gonad
5
ovary
3
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1257
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
792
GRCh38
789
hg19
Lab
1142
AMP-T2D consortium
78
Katalin Susztak, Upenn
47
KPMP
34
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
9
audit script error
2
inconsistent ontology term
files.file_type!
bed narrowPeak
month_released!
August, 2017
organ_slims!
bone element
brain
BIOSAMPLE
ASSAY
1352 results
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total RNA-seq
single cell RNA-seq
ChIP-seq
ATAC-seq
snATAC-seq
pCHi-C
WGBS
Hi-C
small RNA-seq
RRBS
MeRIP-seq
RNA microarray
snDrop-seq
tissue
adipose tissue
382
2
1
islet of Langerhans
203
6
27
30
7
4
3
1
4
liver
167
1
32
1
1
1
kidney
49
64
7
11
6
1
1
heart left ventricle
3
18
6
1
4
1
1
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