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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
572
total RNA-seq
246
ChIP-seq
180
single cell RNA-seq
46
ATAC-seq
28
snATAC-seq
23
pCHi-C
21
WGBS
16
Hi-C
14
small RNA-seq
11
RRBS
4
MeRIP-seq
3
snDrop-seq
2
RNA microarray
1
DNase-seq
Assay category
766
Transcription
246
DNA binding
75
DNA accessibility
32
DNA methylation
16
3D chromatin structure
Target of assay
163
control
78
histone
78
histone modification
48
narrow histone mark
30
broad histone mark
7
transcription factor
2
RNA binding protein
2
nucleotide modification
Date released
166
May, 2020
164
August, 2017
164
August, 2021
120
July, 2018
90
October, 2019
60
July, 2019
47
September, 2023
40
May, 2021
36
March, 2020
28
May, 2022
24
February, 2023
24
November, 2017
23
February, 2020
22
May, 2019
20
November, 2019
19
April, 2020
15
April, 2019
14
May, 2023
12
December, 2017
11
October, 2017
11
October, 2018
9
February, 2021
9
November, 2018
8
January, 2021
6
April, 2018
6
September, 2017
5
March, 2019
4
December, 2018
4
November, 2020
3
December, 2019
1
August, 2022
1
January, 2018
1
January, 2019
Available data
1401
bam
1291
bigWig
bed narrowPeak
618
tsv
551
bigBed narrowPeak
334
fastq
230
tagAlign
210
bed broadPeak
199
bed bed3+
174
bigBed broadPeak
69
txt
64
xls
23
bed bedMethyl
23
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
1
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1165
Homo sapiens
Biosample type
1167
tissue
790
primary cell
261
in vitro differentiated cells
258
cell line
8
stem cell
Organ
534
connective tissue
adipose tissue
382
pancreas
248
liver
bone element
146
kidney
140
heart
73
brain
33
blood vessel
33
vasculature
31
musculature of body
30
limb
26
eye
20
lung
16
nerve
11
artery
11
spleen
8
skeleton
5
gonad
5
ovary
3
epithelium
2
intestine
2
thymus
1
adrenal gland
esophagus
1
large intestine
1
lymph node
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1072
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
507
GRCh38
505
hg19
Lab
957
AMP-T2D consortium
78
Katalin Susztak, Upenn
47
KPMP
34
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
9
audit script error
3
inconsistent ontology term
Audit category:
10
missing controlled_by
files.file_type!
bed narrowPeak
organ_slims!
adipose tissue
bone element
esophagus
BIOSAMPLE
ASSAY
1167 results
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Clear Filters
total RNA-seq
ChIP-seq
single cell RNA-seq
ATAC-seq
snATAC-seq
pCHi-C
WGBS
Hi-C
small RNA-seq
RRBS
MeRIP-seq
snDrop-seq
RNA microarray
DNase-seq
tissue
islet of Langerhans
292
51
6
31
7
4
3
1
4
liver
167
63
1
1
3
1
1
1
kidney
49
7
64
11
6
1
1
heart left ventricle
3
6
18
1
4
1
1
heart right ventricle
1
2
17
1
2
1
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