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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
single cell RNA-seq
16
ChIP-seq
15
total RNA-seq
8
WGBS
3
Hi-C
3
pCHi-C
1
RRBS
1
small RNA-seq
Assay category
109
Transcription
16
DNA binding
9
DNA methylation
3
3D chromatin structure
Target of assay
16
control
Date released
92
August, 2021
16
July, 2019
10
April, 2019
7
March, 2020
6
May, 2019
3
February, 2020
3
October, 2019
2
May, 2021
1
February, 2023
Available data
bed narrowPeak
147
bigWig
127
bam
111
tsv
83
bigBed narrowPeak
27
bed bed3+
27
bed broadPeak
27
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
3
bedpe bed3+
3
hic
Organism
140
Homo sapiens
Biosample type
140
tissue
54
cell line
7
primary cell
1
in vitro differentiated cells
Organ
534
connective tissue
475
adipose tissue
381
pancreas
248
liver
150
bone element
145
kidney
140
heart
73
brain
33
blood vessel
33
vasculature
31
musculature of body
30
limb
26
eye
20
lung
16
nerve
11
artery
11
spleen
8
skeleton
5
gonad
5
ovary
3
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
140
AMP
Genome assembly (visualization)
19
GRCh38
17
hg19
Lab
140
AMP-T2D consortium
files.file_type!
bed narrowPeak
target.investigated_as!
RNA binding protein
other post-translational modification
BIOSAMPLE
ASSAY
140 results
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single cell RNA-seq
ChIP-seq
total RNA-seq
WGBS
Hi-C
pCHi-C
RRBS
small RNA-seq
tissue
heart left ventricle
18
6
3
4
1
1
1
heart right ventricle
17
2
1
2
1
1
right cardiac atrium
18
1
1
1
left cardiac atrium
18
heart
1
2
4
1
1
1
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