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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1031total RNA-seq
  • 312ChIP-seq
  • 180single cell RNA-seq
  • 87RNA microarray
  • 52ATAC-seq
  • 28snATAC-seq
  • 27WGBS
  • 25pCHi-C
  • 16Hi-C
  • 16small RNA-seq
  • 11RRBS
  • 4MeRIP-seq
  • 3snDrop-seq
  • 1DNase-seq
Assay category
  • 1227Transcription
  • 312DNA binding
  • 81DNA accessibility
  • 38DNA methylation
  • 163D chromatin structure
Target of assay
  • 187control
  • 108histone
  • 108histone modification
  • 58narrow histone mark
  • 50broad histone mark
  • 19transcription factor
  • 2RNA binding protein
  • 2nucleotide modification
Date released
  • 537February, 2021
  • 218August, 2017
  • 166May, 2020
  • 165August, 2021
  • 120July, 2018
  • 91October, 2019
  • 70July, 2019
  • 47September, 2023
  • 40May, 2021
  • 38March, 2020
  • 32February, 2023
  • 29October, 2018
  • 28May, 2022
  • 25February, 2020
  • 24November, 2017
  • 22May, 2019
  • 20November, 2019
  • 19April, 2020
  • 15April, 2019
  • 15May, 2023
  • 12December, 2017
  • 11October, 2017
  • 9November, 2018
  • 8January, 2021
  • 6April, 2018
  • 6September, 2017
  • 5March, 2019
  • 4December, 2018
  • 4November, 2020
  • 3December, 2019
  • 2January, 2018
  • 1August, 2022
  • 1January, 2019
Available data
  • 1907bam
  • 1772bigWig
  • 1076tsv
  • bed narrowPeak
  • 561bigBed narrowPeak
  • 377fastq
  • 238tagAlign
  • 213bed broadPeak
  • 205bed bed3+
  • 176bigBed broadPeak
  • 157txt
  • 64xls
  • 25bed bedMethyl
  • 25bigBed bedMethyl
  • 11hic
  • 10bedpe bed3+
  • 6csv
  • 5bed bed3
  • 1bedpe
  • 1tagAlign bed3+
Organism
  • 1790Homo sapiens
Biosample type
  • 1793tissue
  • 793primary cell
  • 262in vitro differentiated cells
  • 258cell line
  • 8stem cell
Organ
  • 534connective tissue
  • 475adipose tissue
  • 382pancreas
  • 248liver
  • 150bone element
  • 146kidney
  • 140heart
  • 73brain
  • 33blood vessel
  • 33vasculature
  • 31musculature of body
  • 30limb
  • 26eye
  • 20lung
  • 16nerve
  • 11artery
  • 11spleen
  • 8skeleton
  • 5gonad
  • 5ovary
  • 3epithelium
  • 2intestine
  • 2thymus
  • 1adrenal gland
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1pericardium
  • 1pituitary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 1698AMP
  • 47KPMP
  • 29T1D
  • 19LungMap
Genome assembly (visualization)
  • 978hg19
  • 976GRCh38
Lab
  • 1583AMP-T2D consortium
  • 78Katalin Susztak, Upenn
  • 47KPMP
  • 34Kyle Gaulton, UCSD
  • 20Karen Mohlke, UNC
  • 19Xin Sun, UCSD
  • 4Bing Ren, UCSD
  • 4Rohit N. Kulkarni, M.D., Ph.D.
  • 2Mark McCarthy, Oxford
  • 1Maike Sander, UCSD
  • 1Stephen Parker, UMich
Audit category:
  • 87inconsistent ontology term
  • 9audit script error
Audit category:
  • 22missing controlled_by
files.file_type!
  • bed narrowPeak
BIOSAMPLE
ASSAY

1793 results

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Clear Filters
total RNA-seq
ChIP-seq
single cell RNA-seq
RNA microarray
ATAC-seq
snATAC-seq
WGBS
pCHi-C
Hi-C
small RNA-seq
RRBS
MeRIP-seq
snDrop-seq
DNase-seq
tissue
islet of Langerhans2925163174314
adipose tissue3821231
liver16763131111
kidney4976411611
bone element84
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