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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
807
total RNA-seq
662
ChIP-seq
244
ATAC-seq
174
DNase-seq
167
single cell RNA-seq
27
WGBS
27
snATAC-seq
21
pCHi-C
16
small RNA-seq
14
Hi-C
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
RNA microarray
3
snDrop-seq
Assay category
990
Transcription
662
DNA binding
449
DNA accessibility
38
DNA methylation
14
3D chromatin structure
Target of assay
433
histone modification
432
histone
264
broad histone mark
168
narrow histone mark
137
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
456
February, 2021
284
August, 2017
October, 2019
May, 2020
172
August, 2021
163
June, 2019
120
July, 2018
115
May, 2019
91
February, 2023
82
November, 2017
80
April, 2019
77
July, 2019
74
October, 2018
59
May, 2022
48
December, 2017
47
September, 2023
40
March, 2020
40
May, 2021
40
May, 2024
40
November, 2019
26
November, 2018
25
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
4
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1528
bam
1442
bigWig
925
tsv
806
bed narrowPeak
514
bigBed narrowPeak
377
fastq
209
bed broadPeak
201
bed bed3+
172
bigBed broadPeak
txt
139
tagAlign
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
10
hic
9
bedpe bed3+
6
csv
5
bed bed3
bedpe
Organism
2175
Homo sapiens
Biosample type
2184
tissue
907
primary cell
630
cell line
383
in vitro differentiated cells
10
stem cell
Organ
545
connective tissue
495
pancreas
487
adipose tissue
305
heart
233
kidney
179
brain
162
liver
107
blood vessel
107
vasculature
81
musculature of body
70
bone element
53
limb
47
artery
35
eye
25
spleen
20
lung
18
ureter
15
epithelium
12
skeleton
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
nerve
1
ovary
1
pericardium
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2087
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1536
GRCh38
1420
hg19
Lab
1896
AMP-T2D consortium
85
Katalin Susztak, Upenn
47
KPMP
46
Kyle Gaulton, UCSD
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
5
inconsistent ontology term
3
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
files.file_type!
bedpe
txt
month_released!
May, 2020
October, 2019
BIOSAMPLE
ASSAY
2184 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
WGBS
snATAC-seq
pCHi-C
small RNA-seq
Hi-C
RRBS
FAIRE-seq
MeRIP-seq
RNA microarray
snDrop-seq
tissue
islet of Langerhans
272
50
55
1
6
7
2
1
1
4
adipose tissue
382
2
2
3
1
kidney
23
75
13
51
6
1
1
1
liver
23
90
20
2
1
3
1
1
1
1
heart left ventricle
3
35
2
3
18
4
1
1
1
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