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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
972
total RNA-seq
260
ATAC-seq
251
ChIP-seq
178
DNase-seq
167
single cell RNA-seq
27
WGBS
27
snATAC-seq
25
pCHi-C
16
small RNA-seq
15
Hi-C
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
RNA microarray
3
snDrop-seq
Assay category
1155
Transcription
469
DNA accessibility
251
DNA binding
38
DNA methylation
15
3D chromatin structure
Target of assay
histone modification
627
histone
324
narrow histone mark
303
broad histone mark
187
control
94
transcription factor
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
456
February, 2021
172
August, 2021
166
May, 2020
163
June, 2019
158
August, 2017
120
July, 2018
91
February, 2023
77
July, 2019
74
October, 2019
59
May, 2022
47
September, 2023
41
December, 2017
40
May, 2021
40
November, 2019
38
March, 2020
33
October, 2018
26
November, 2018
25
February, 2020
22
May, 2019
19
April, 2020
16
April, 2019
15
May, 2023
12
November, 2017
11
October, 2017
8
January, 2021
7
December, 2018
6
April, 2018
6
September, 2017
4
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
1
January, 2019
Available data
1418
bam
1223
bigWig
1076
tsv
438
bed narrowPeak
288
fastq
229
bigBed narrowPeak
191
bed bed3+
178
bed broadPeak
176
bigBed broadPeak
txt
64
xls
52
tagAlign
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
bedpe
Organism
1960
Homo sapiens
Biosample type
1963
tissue
841
primary cell
558
cell line
268
in vitro differentiated cells
8
stem cell
Organ
509
connective tissue
451
adipose tissue
417
pancreas
289
liver
216
kidney
208
heart
81
brain
76
blood vessel
76
vasculature
73
limb
70
bone element
56
musculature of body
54
eye
52
artery
20
lung
19
nerve
19
spleen
18
ureter
15
epithelium
12
skeleton
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1868
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
1338
GRCh38
1293
hg19
Lab
1715
AMP-T2D consortium
85
Katalin Susztak, Upenn
47
KPMP
46
Kyle Gaulton, UCSD
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
5
inconsistent ontology term
3
audit script error
Audit category:
17
missing controlled_by
files.file_type!
bedpe
txt
target.investigated_as!
RNA binding protein
histone modification
BIOSAMPLE
ASSAY
1963 results
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Clear Filters
total RNA-seq
ATAC-seq
ChIP-seq
DNase-seq
single cell RNA-seq
WGBS
snATAC-seq
pCHi-C
small RNA-seq
Hi-C
RRBS
FAIRE-seq
MeRIP-seq
RNA microarray
snDrop-seq
tissue
islet of Langerhans
286
68
18
1
6
7
4
2
1
1
4
adipose tissue
382
3
1
3
1
liver
167
20
79
2
1
3
1
1
1
1
kidney
75
6
13
51
6
1
1
1
bone tissue
58
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