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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
879
ChIP-seq
585
total RNA-seq
215
ATAC-seq
174
DNase-seq
172
single cell RNA-seq
28
snATAC-seq
27
WGBS
23
pCHi-C
16
small RNA-seq
15
Hi-C
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
RNA microarray
Assay category
879
DNA binding
773
Transcription
421
DNA accessibility
38
DNA methylation
15
3D chromatin structure
Target of assay
608
histone modification
607
histone
318
narrow histone mark
289
broad histone mark
180
control
93
transcription factor
27
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
February, 2021
284
August, 2017
227
August, 2021
216
October, 2019
193
May, 2020
161
June, 2019
120
July, 2018
110
May, 2019
82
November, 2017
80
April, 2019
76
July, 2019
74
October, 2018
66
May, 2022
60
February, 2023
48
December, 2017
47
September, 2023
40
May, 2024
40
November, 2019
39
March, 2020
39
May, 2021
26
November, 2018
23
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
4
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1421
bam
1301
bigWig
914
bed narrowPeak
619
tsv
536
bigBed narrowPeak
377
fastq
238
tagAlign
209
bed broadPeak
201
bed bed3+
172
bigBed broadPeak
68
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
5
bed bed3
bedpe
1
tagAlign bed3+
Organism
2147
Homo sapiens
Biosample type
2156
tissue
1038
primary cell
566
cell line
368
in vitro differentiated cells
10
stem cell
Organ
504
pancreas
360
liver
313
heart
291
kidney
265
brain
133
blood vessel
133
vasculature
116
limb
103
connective tissue
102
adipose tissue
82
musculature of body
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
15
epithelium
8
bone element
8
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2060
AMP
47
KPMP
30
T1D
19
LungMap
Genome assembly (visualization)
1345
GRCh38
1275
hg19
Lab
1806
AMP-T2D consortium
142
Katalin Susztak, Upenn
51
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
7
inconsistent ontology term
4
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
files.file_type!
bedpe
month_released!
February, 2021
organ_slims!
artery
thymus
BIOSAMPLE
ASSAY
2156 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
single cell RNA-seq
snATAC-seq
WGBS
pCHi-C
small RNA-seq
Hi-C
RRBS
FAIRE-seq
MeRIP-seq
RNA microarray
tissue
islet of Langerhans
71
292
68
1
6
7
4
2
1
1
4
liver
145
167
20
2
3
1
1
1
1
kidney
27
49
75
13
59
6
1
1
1
heart left ventricle
35
3
2
3
18
4
1
1
1
left cardiac atrium
40
1
18
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