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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
195
ChIP-seq
54
ATAC-seq
48
total RNA-seq
4
DNase-seq
4
pCHi-C
1
Hi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
195
DNA binding
59
DNA accessibility
49
Transcription
1
3D chromatin structure
Target of assay
168
histone
168
histone modification
129
narrow histone mark
39
broad histone mark
27
control
Date released
545
February, 2021
284
August, 2017
242
October, 2019
229
August, 2021
193
May, 2020
163
June, 2019
120
July, 2018
115
May, 2019
95
February, 2023
82
November, 2017
80
April, 2019
77
July, 2019
74
October, 2018
66
May, 2022
48
December, 2017
47
September, 2023
40
March, 2020
40
May, 2021
40
May, 2024
40
November, 2019
26
November, 2018
25
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
4
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
210
bam
189
bed narrowPeak
180
bigWig
49
tagAlign
47
bigBed narrowPeak
24
fastq
8
tsv
7
txt
5
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
1
bedpe bed3+
1
hic
1
tagAlign bed3+
Organism
308
Homo sapiens
Biosample type
308
tissue
168
primary cell
30
cell line
8
in vitro differentiated cells
Organ
86
brain
69
limb
46
liver
42
nerve
27
pancreas
26
artery
26
blood vessel
26
vasculature
21
eye
8
heart
4
gonad
4
kidney
4
ovary
2
connective tissue
2
musculature of body
2
pituitary gland
1
adipose tissue
1
lymph node
1
skin of body
Project
308
AMP
Genome assembly (visualization)
202
hg19
161
GRCh38
Lab
244
AMP-T2D consortium
40
Karen Mohlke, UNC
24
Kyle Gaulton, UCSD
Audit category:
2
inconsistent ontology term
1
audit script error
files.file_type!
bedpe
BIOSAMPLE
ASSAY
308 results
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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
DNase-seq
pCHi-C
Hi-C
single cell RNA-seq
snATAC-seq
tissue
islet of Langerhans
21
31
20
4
liver
5
20
21
tibial nerve
35
1
4
2
tibial artery
23
1
2
heart
5
2
1
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