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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
205
ChIP-seq
27
ATAC-seq
23
total RNA-seq
13
DNase-seq
6
WGBS
4
pCHi-C
3
single cell RNA-seq
1
FAIRE-seq
1
Hi-C
Assay category
205
DNA binding
41
DNA accessibility
26
Transcription
6
DNA methylation
1
3D chromatin structure
Target of assay
168
histone
168
histone modification
129
narrow histone mark
39
broad histone mark
30
control
7
transcription factor
3
other context
3
other post-translational modification
Date released
545
February, 2021
284
August, 2017
242
October, 2019
229
August, 2021
193
May, 2020
163
June, 2019
120
July, 2018
115
May, 2019
95
February, 2023
82
November, 2017
80
April, 2019
77
July, 2019
74
October, 2018
66
May, 2022
48
December, 2017
47
September, 2023
40
March, 2020
40
May, 2021
40
May, 2024
40
November, 2019
26
November, 2018
25
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
4
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
212
bam
183
bigWig
168
bed narrowPeak
64
bigBed narrowPeak
49
tagAlign
26
fastq
13
bed bed3+
13
bed broadPeak
13
bigBed broadPeak
8
tsv
6
bed bedMethyl
6
bigBed bedMethyl
1
bedpe bed3+
1
hic
1
tagAlign bed3+
Organism
283
Homo sapiens
Biosample type
283
tissue
91
cell line
35
primary cell
8
in vitro differentiated cells
Organ
88
brain
69
limb
42
nerve
26
artery
26
blood vessel
26
vasculature
21
eye
18
kidney
13
liver
10
pancreas
9
spleen
8
heart
4
connective tissue
4
gonad
4
ovary
3
adipose tissue
2
pituitary gland
1
lymph node
1
skin of body
Project
283
AMP
Genome assembly (visualization)
195
GRCh38
181
hg19
Lab
269
AMP-T2D consortium
14
Katalin Susztak, Upenn
Audit category:
2
inconsistent ontology term
files.file_type!
bedpe
BIOSAMPLE
ASSAY
283 results
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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
DNase-seq
WGBS
pCHi-C
single cell RNA-seq
FAIRE-seq
Hi-C
tissue
islet of Langerhans
21
13
14
4
tibial nerve
35
1
4
2
tibial artery
23
1
2
kidney
4
11
3
liver
9
1
2
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