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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
833
ChIP-seq
456
total RNA-seq
254
ATAC-seq
180
single cell RNA-seq
176
DNase-seq
86
RNA microarray
28
snATAC-seq
24
pCHi-C
14
small RNA-seq
7
WGBS
6
Hi-C
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
2
RRBS
Assay category
833
DNA binding
650
Transcription
462
DNA accessibility
9
DNA methylation
6
3D chromatin structure
Target of assay
595
histone modification
594
histone
311
narrow histone mark
283
broad histone mark
163
control
77
transcription factor
23
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
239
October, 2019
227
August, 2021
224
August, 2017
193
May, 2020
162
June, 2019
July, 2018
115
May, 2019
101
February, 2021
94
February, 2023
82
November, 2017
80
April, 2019
66
May, 2022
53
July, 2019
51
October, 2018
48
December, 2017
47
September, 2023
40
May, 2021
40
May, 2024
38
November, 2019
32
March, 2020
23
February, 2020
22
October, 2017
19
April, 2020
19
November, 2018
14
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
1
August, 2022
1
January, 2018
Available data
1293
bam
1175
bigWig
971
bed narrowPeak
551
bigBed narrowPeak
503
tsv
332
fastq
230
tagAlign
210
bed broadPeak
199
bed bed3+
174
bigBed broadPeak
157
txt
64
xls
23
bed bedMethyl
bigBed bedMethyl
11
hic
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2069
Homo sapiens
Biosample type
2077
tissue
990
primary cell
659
cell line
291
in vitro differentiated cells
9
stem cell
Organ
connective tissue
486
adipose tissue
376
pancreas
359
liver
303
heart
298
kidney
264
brain
158
bone element
131
blood vessel
131
vasculature
121
limb
77
musculature of body
73
artery
56
eye
43
nerve
23
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1980
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1249
GRCh38
1139
hg19
Lab
1726
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
90
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
14
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
files.file_type!
bedpe bed3+
bigBed bedMethyl
month_released!
July, 2018
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
2077 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
pCHi-C
small RNA-seq
WGBS
Hi-C
FAIRE-seq
MeRIP-seq
snDrop-seq
RRBS
tissue
liver
145
167
20
1
2
1
1
3
islet of Langerhans
70
172
68
6
1
7
4
1
1
4
kidney
27
49
75
64
13
6
1
1
bone element
84
heart left ventricle
35
3
2
18
3
1
2
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