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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
907
ChIP-seq
251
ATAC-seq
178
DNase-seq
106
total RNA-seq
61
single cell RNA-seq
27
WGBS
18
snATAC-seq
11
RRBS
6
Hi-C
5
pCHi-C
4
FAIRE-seq
4
MeRIP-seq
1
RNA microarray
Assay category
907
DNA binding
451
DNA accessibility
167
Transcription
38
DNA methylation
6
3D chromatin structure
Target of assay
628
histone modification
627
histone
324
narrow histone mark
303
broad histone mark
187
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
233
October, 2019
195
August, 2017
163
June, 2019
129
August, 2021
115
May, 2019
February, 2021
91
February, 2023
82
November, 2017
80
April, 2019
74
October, 2018
66
May, 2022
50
May, 2020
48
December, 2017
47
September, 2023
40
May, 2024
30
July, 2019
26
November, 2018
23
October, 2017
20
November, 2019
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
September, 2017
5
March, 2019
5
March, 2020
4
July, 2018
4
November, 2020
2
January, 2018
2
May, 2021
1
August, 2022
1
December, 2019
Available data
1455
bam
1328
bigWig
976
bed narrowPeak
tsv
561
bigBed narrowPeak
377
fastq
238
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
68
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
bedpe bed3+
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1571
Homo sapiens
Biosample type
1579
tissue
773
primary cell
523
cell line
252
in vitro differentiated cells
6
stem cell
Organ
287
kidney
242
brain
227
pancreas
205
liver
199
heart
118
blood vessel
118
vasculature
109
limb
90
connective tissue
89
adipose tissue
73
musculature of body
69
artery
51
eye
38
nerve
24
spleen
18
ureter
12
epithelium
8
bone element
8
skeleton
4
gonad
4
ovary
2
pituitary gland
1
lymph node
1
pericardium
1
skin of body
1
thymus
Project
1501
AMP
47
KPMP
31
T1D
Genome assembly (visualization)
934
GRCh38
820
hg19
Lab
1248
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
4
inconsistent ontology term
2
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
files.file_type!
bedpe bed3+
tsv
lab.title!
Xin Sun, UCSD
month_released!
February, 2021
BIOSAMPLE
ASSAY
1579 results
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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
total RNA-seq
single cell RNA-seq
WGBS
snATAC-seq
RRBS
Hi-C
pCHi-C
FAIRE-seq
MeRIP-seq
RNA microarray
tissue
kidney
27
75
13
49
59
6
1
1
1
liver
145
20
2
20
3
1
islet of Langerhans
71
67
1
31
7
1
1
4
1
4
body of pancreas
35
4
4
2
heart left ventricle
35
2
3
4
1
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