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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
933
total RNA-seq
906
ChIP-seq
260
ATAC-seq
178
DNase-seq
167
single cell RNA-seq
27
WGBS
27
snATAC-seq
24
pCHi-C
16
small RNA-seq
11
RRBS
6
Hi-C
4
FAIRE-seq
4
MeRIP-seq
3
RNA microarray
3
snDrop-seq
Assay category
1116
Transcription
906
DNA binding
469
DNA accessibility
38
DNA methylation
6
3D chromatin structure
Target of assay
627
histone modification
626
histone
323
narrow histone mark
303
broad histone mark
187
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
456
February, 2021
284
August, 2017
240
October, 2019
193
May, 2020
171
August, 2021
163
June, 2019
120
July, 2018
115
May, 2019
91
February, 2023
82
November, 2017
80
April, 2019
77
July, 2019
74
October, 2018
59
May, 2022
48
December, 2017
47
September, 2023
May, 2021
40
May, 2024
39
November, 2019
33
March, 2020
26
November, 2018
25
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1869
bam
1734
bigWig
1038
tsv
984
bed narrowPeak
561
bigBed narrowPeak
377
fastq
238
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2560
Homo sapiens
Biosample type
2569
tissue
878
primary cell
638
cell line
252
in vitro differentiated cells
10
stem cell
Organ
547
connective tissue
488
adipose tissue
459
pancreas
360
liver
308
heart
265
brain
237
kidney
132
blood vessel
132
vasculature
122
limb
79
musculature of body
73
artery
70
bone element
56
eye
43
nerve
25
spleen
20
lung
18
ureter
15
epithelium
12
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
2473
AMP
47
KPMP
30
T1D
19
LungMap
Genome assembly (visualization)
1821
GRCh38
1707
hg19
Lab
2283
AMP-T2D consortium
85
Katalin Susztak, Upenn
47
KPMP
44
Kyle Gaulton, UCSD
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
7
inconsistent ontology term
3
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
files.file_type!
bedpe bed3+
txt
month_released!
May, 2021
organ_slims!
lymph node
BIOSAMPLE
ASSAY
2569 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
WGBS
snATAC-seq
pCHi-C
small RNA-seq
RRBS
Hi-C
FAIRE-seq
MeRIP-seq
RNA microarray
snDrop-seq
tissue
islet of Langerhans
250
70
68
1
6
7
4
1
1
1
4
adipose tissue
382
2
3
3
1
liver
167
145
20
2
1
3
1
1
1
kidney
27
75
13
51
6
1
1
1
heart left ventricle
3
35
2
3
18
4
1
1
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