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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
892
ChIP-seq
586
total RNA-seq
243
ATAC-seq
178
DNase-seq
174
single cell RNA-seq
28
snATAC-seq
27
WGBS
25
pCHi-C
16
small RNA-seq
11
RRBS
5
Hi-C
4
FAIRE-seq
4
MeRIP-seq
3
RNA microarray
Assay category
892
DNA binding
776
Transcription
453
DNA accessibility
38
DNA methylation
5
3D chromatin structure
Target of assay
616
histone modification
615
histone
322
narrow histone mark
293
broad histone mark
184
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
February, 2021
284
August, 2017
241
October, 2019
227
August, 2021
193
May, 2020
163
June, 2019
120
July, 2018
115
May, 2019
95
February, 2023
82
November, 2017
80
April, 2019
77
July, 2019
74
October, 2018
66
May, 2022
48
December, 2017
47
September, 2023
40
May, 2021
40
May, 2024
39
November, 2019
33
March, 2020
26
November, 2018
25
February, 2020
October, 2017
19
April, 2020
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
4
November, 2020
3
December, 2019
3
March, 2019
2
January, 2018
1
August, 2022
Available data
1440
bam
1314
bigWig
964
bed narrowPeak
623
tsv
555
bigBed narrowPeak
360
fastq
224
tagAlign
209
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
68
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
10
hic
bedpe bed3+
5
bed bed3
1
tagAlign bed3+
Organism
2187
Homo sapiens
Biosample type
2196
tissue
1036
primary cell
531
cell line
361
in vitro differentiated cells
10
stem cell
Organ
494
pancreas
359
liver
310
heart
291
kidney
249
brain
132
blood vessel
132
vasculature
116
limb
102
connective tissue
101
adipose tissue
80
musculature of body
73
artery
56
eye
43
nerve
24
spleen
20
lung
18
ureter
15
epithelium
8
bone element
8
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2099
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1392
GRCh38
1279
hg19
Lab
1849
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
Audit category:
27
inconsistent control
7
inconsistent ontology term
4
audit script error
Audit category:
22
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
files.file_type!
bedpe bed3+
lab.title!
Bing Ren, UCSD
month_released!
February, 2021
October, 2017
BIOSAMPLE
ASSAY
2196 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
single cell RNA-seq
snATAC-seq
WGBS
pCHi-C
small RNA-seq
RRBS
Hi-C
FAIRE-seq
MeRIP-seq
RNA microarray
tissue
islet of Langerhans
71
291
66
1
6
7
4
1
1
4
liver
145
167
20
2
3
1
1
1
kidney
27
49
75
13
59
6
1
1
1
heart left ventricle
35
3
2
3
18
4
1
1
left cardiac atrium
40
1
18
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