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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
949
total RNA-seq
866
ChIP-seq
131
ATAC-seq
113
single cell RNA-seq
87
RNA microarray
27
WGBS
24
pCHi-C
16
small RNA-seq
15
DNase-seq
11
RRBS
4
FAIRE-seq
4
Hi-C
3
snDrop-seq
2
snATAC-seq
Assay category
1078
Transcription
866
DNA binding
152
DNA accessibility
38
DNA methylation
4
3D chromatin structure
Target of assay
592
histone modification
591
histone
308
narrow histone mark
283
broad histone mark
185
control
89
transcription factor
23
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
545
February, 2021
284
August, 2017
240
October, 2019
193
May, 2020
June, 2019
120
July, 2018
115
May, 2019
99
August, 2021
82
November, 2017
80
April, 2019
77
February, 2023
77
July, 2019
74
October, 2018
48
December, 2017
39
November, 2019
38
May, 2021
33
March, 2020
26
November, 2018
25
February, 2020
22
October, 2017
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
3
December, 2019
2
January, 2018
2
May, 2022
1
August, 2022
1
May, 2023
Available data
1719
bam
1548
bigWig
1075
tsv
679
bed narrowPeak
398
bigBed narrowPeak
351
fastq
238
tagAlign
94
txt
48
bed broadPeak
42
bed bed3+
25
bed bedMethyl
25
bigBed bedMethyl
13
bigBed broadPeak
bedpe bed3+
9
hic
6
csv
5
bed bed3
1
tagAlign bed3+
Organism
2244
Homo sapiens
Biosample type
2252
tissue
614
cell line
468
primary cell
333
in vitro differentiated cells
8
stem cell
Organ
546
connective tissue
487
adipose tissue
436
pancreas
320
liver
243
heart
240
brain
158
bone element
129
blood vessel
129
vasculature
90
limb
71
artery
53
eye
48
musculature of body
43
nerve
42
kidney
25
spleen
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lung
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
2248
AMP
4
T1D
Genome assembly (visualization)
1578
GRCh38
1556
hg19
Lab
2252
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
90
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
files.file_type!
bedpe bed3+
month_released!
June, 2019
organ_slims!
lymph node
BIOSAMPLE
ASSAY
2252 results
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total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
RNA microarray
WGBS
pCHi-C
small RNA-seq
DNase-seq
RRBS
FAIRE-seq
Hi-C
snDrop-seq
snATAC-seq
tissue
islet of Langerhans
280
70
34
6
4
1
1
1
1
adipose tissue
382
2
3
3
1
liver
147
145
1
3
1
1
2
1
bone element
84
heart left ventricle
3
35
2
18
4
1
1
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