Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1031
total RNA-seq
666
ChIP-seq
260
ATAC-seq
180
single cell RNA-seq
178
DNase-seq
87
RNA microarray
28
snATAC-seq
25
pCHi-C
16
Hi-C
16
small RNA-seq
11
WGBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
2
RRBS
Assay category
1227
Transcription
666
DNA binding
470
DNA accessibility
16
3D chromatin structure
13
DNA methylation
Target of assay
442
histone modification
441
histone
227
broad histone mark
214
narrow histone mark
135
control
94
transcription factor
28
RNA binding protein
3
other context
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
229
August, 2021
220
August, 2017
193
October, 2019
163
June, 2019
143
May, 2020
120
July, 2018
115
May, 2019
95
February, 2023
80
April, 2019
74
October, 2018
66
May, 2022
63
July, 2019
48
December, 2017
47
September, 2023
40
March, 2020
40
May, 2021
40
May, 2024
40
November, 2019
25
February, 2020
19
April, 2020
17
November, 2018
16
November, 2017
15
May, 2023
9
October, 2017
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1904
bam
1769
bigWig
1076
tsv
981
bed narrowPeak
558
bigBed narrowPeak
374
fastq
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
157
txt
64
xls
25
bed bedMethyl
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2509
Homo sapiens
Biosample type
2511
tissue
978
primary cell
639
cell line
354
in vitro differentiated cells
10
stem cell
Organ
537
connective tissue
483
pancreas
478
adipose tissue
306
heart
298
kidney
290
liver
158
bone element
146
brain
132
blood vessel
132
vasculature
121
limb
73
artery
64
musculature of body
56
eye
43
nerve
20
lung
20
spleen
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2414
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1724
GRCh38
1638
hg19
Lab
2159
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
91
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
22
missing controlled_by
Audit category:
6
inconsistent control read length
files.file_type!
bigBed bedMethyl
tagAlign
target.investigated_as!
other post-translational modification
BIOSAMPLE
ASSAY
2511 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
pCHi-C
Hi-C
small RNA-seq
WGBS
FAIRE-seq
MeRIP-seq
snDrop-seq
RRBS
tissue
islet of Langerhans
292
62
68
6
1
7
4
3
1
4
adipose tissue
382
2
3
1
1
liver
167
75
20
1
2
1
1
1
3
kidney
49
27
75
64
13
6
1
1
bone element
84
+ See 148 more…
See all biosamples
Download