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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
958
total RNA-seq
625
ChIP-seq
163
single cell RNA-seq
146
DNase-seq
143
ATAC-seq
87
RNA microarray
22
pCHi-C
22
snATAC-seq
14
Hi-C
12
small RNA-seq
10
WGBS
4
MeRIP-seq
3
FAIRE-seq
3
snDrop-seq
2
RRBS
Assay category
1133
Transcription
625
DNA binding
314
DNA accessibility
14
3D chromatin structure
12
DNA methylation
Target of assay
390
histone modification
389
histone
197
broad histone mark
192
narrow histone mark
146
control
91
transcription factor
25
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
279
August, 2017
193
May, 2020
135
June, 2019
130
October, 2019
120
July, 2018
95
August, 2021
80
April, 2019
74
October, 2018
66
May, 2022
59
February, 2023
48
December, 2017
47
July, 2019
47
September, 2023
40
May, 2021
40
May, 2024
40
November, 2019
37
May, 2019
35
March, 2020
19
April, 2020
18
November, 2018
10
February, 2020
8
January, 2021
7
December, 2018
7
January, 2019
7
October, 2017
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
1
May, 2023
Available data
1594
bam
1500
bigWig
1039
tsv
628
bed narrowPeak
383
bigBed narrowPeak
365
fastq
173
bed bed3+
172
bed broadPeak
144
bigBed broadPeak
120
tagAlign
100
txt
23
bed bedMethyl
bigBed bedMethyl
9
bedpe bed3+
9
hic
6
csv
4
bed bed3
1
bedpe
Organism
2205
Homo sapiens
Biosample type
2214
tissue
1032
primary cell
595
cell line
394
in vitro differentiated cells
10
stem cell
Organ
545
connective tissue
499
pancreas
486
adipose tissue
360
liver
306
heart
brain
158
bone element
156
kidney
blood vessel
132
vasculature
121
limb
79
musculature of body
73
artery
56
eye
43
nerve
23
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2117
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1533
hg19
1461
GRCh38
Lab
2004
AMP-T2D consortium
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
88
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
22
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
files.file_type!
bigBed bedMethyl
lab.title!
Katalin Susztak, Upenn
organ_slims!
blood vessel
brain
BIOSAMPLE
ASSAY
2214 results
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Clear Filters
total RNA-seq
ChIP-seq
single cell RNA-seq
DNase-seq
ATAC-seq
RNA microarray
pCHi-C
snATAC-seq
Hi-C
small RNA-seq
WGBS
MeRIP-seq
FAIRE-seq
snDrop-seq
RRBS
tissue
islet of Langerhans
292
71
6
1
67
4
7
3
4
1
adipose tissue
382
2
3
1
1
liver
167
145
1
2
20
1
1
1
3
kidney
27
53
13
1
bone element
84
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