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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
969
total RNA-seq
900
ChIP-seq
248
ATAC-seq
180
single cell RNA-seq
28
snATAC-seq
25
pCHi-C
16
Hi-C
16
small RNA-seq
15
DNase-seq
11
WGBS
4
FAIRE-seq
4
MeRIP-seq
3
RNA microarray
3
snDrop-seq
2
RRBS
Assay category
1165
Transcription
900
DNA binding
295
DNA accessibility
16
3D chromatin structure
13
DNA methylation
Target of assay
622
histone modification
621
histone
322
narrow histone mark
299
broad histone mark
186
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
395
February, 2021
279
August, 2017
242
October, 2019
229
August, 2021
193
May, 2020
June, 2019
120
July, 2018
115
May, 2019
87
February, 2023
82
November, 2017
80
April, 2019
74
October, 2018
66
May, 2022
63
July, 2019
48
December, 2017
47
September, 2023
40
March, 2020
40
May, 2021
40
May, 2024
40
November, 2019
25
February, 2020
23
October, 2017
20
November, 2018
19
April, 2020
15
May, 2023
8
January, 2021
7
December, 2018
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1671
bam
1545
bigWig
1018
tsv
807
bed narrowPeak
392
bigBed narrowPeak
370
fastq
238
tagAlign
69
txt
64
xls
50
bed broadPeak
42
bed bed3+
25
bed bedMethyl
bigBed bedMethyl
13
bigBed broadPeak
11
hic
10
bedpe bed3+
6
csv
1
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2415
Homo sapiens
Biosample type
2424
tissue
1022
primary cell
638
cell line
394
in vitro differentiated cells
10
stem cell
Organ
544
connective tissue
495
pancreas
485
adipose tissue
360
liver
279
heart
239
brain
230
kidney
bone element
129
blood vessel
129
vasculature
89
limb
71
artery
53
eye
47
musculature of body
43
nerve
20
lung
16
skeleton
16
spleen
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2327
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1608
GRCh38
1523
hg19
Lab
2072
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
9
audit script error
6
inconsistent ontology term
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
files.file_type!
bigBed bedMethyl
month_released!
January, 2019
June, 2019
organ_slims!
bone element
BIOSAMPLE
ASSAY
2424 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
pCHi-C
Hi-C
small RNA-seq
DNase-seq
WGBS
FAIRE-seq
MeRIP-seq
RNA microarray
snDrop-seq
RRBS
tissue
islet of Langerhans
292
71
68
6
7
4
3
1
1
4
adipose tissue
382
2
3
1
1
liver
167
145
20
1
1
1
1
2
3
kidney
49
27
75
64
6
1
1
heart left ventricle
3
35
2
18
1
1
2
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