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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
170
total RNA-seq
109
ChIP-seq
21
ATAC-seq
4
DNase-seq
4
WGBS
3
small RNA-seq
1
Hi-C
1
pCHi-C
1
single cell RNA-seq
Assay category
174
Transcription
109
DNA binding
25
DNA accessibility
4
DNA methylation
1
3D chromatin structure
Target of assay
70
histone modification
69
histone
control
44
narrow histone mark
39
transcription factor
25
broad histone mark
2
RNA binding protein
2
chromatin remodeller
Date released
170
May, 2020
42
August, 2017
40
May, 2022
36
December, 2017
8
July, 2019
7
November, 2018
6
October, 2019
3
March, 2020
1
February, 2020
1
February, 2021
Available data
265
bigWig
245
bam
154
tsv
113
bed narrowPeak
63
fastq
49
bigBed narrowPeak
44
tagAlign
5
bed bed3+
3
bed broadPeak
3
bigBed broadPeak
1
bed bedMethyl
1
bedpe bed3+
bigBed bedMethyl
1
csv
1
hic
Organism
314
Homo sapiens
Biosample type
340
cell line
314
tissue
14
in vitro differentiated cells
12
primary cell
Organ
521
connective tissue
470
pancreas
462
adipose tissue
314
liver
292
kidney
290
heart
239
brain
158
bone element
116
blood vessel
116
vasculature
104
limb
75
musculature of body
66
artery
56
eye
32
nerve
20
lung
18
ureter
16
skeleton
15
epithelium
15
spleen
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
314
AMP
Genome assembly (visualization)
266
hg19
237
GRCh38
Lab
274
AMP-T2D consortium
40
Karen Mohlke, UNC
Audit category:
27
inconsistent control
Audit category:
1
inconsistent control read length
files.file_type!
bigBed bedMethyl
target.investigated_as!
control
BIOSAMPLE
ASSAY
314 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
WGBS
small RNA-seq
Hi-C
pCHi-C
single cell RNA-seq
tissue
liver
167
102
20
2
3
1
1
1
1
right lobe of liver
3
7
1
2
1
2
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