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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1029
total RNA-seq
523
ChIP-seq
220
ATAC-seq
178
single cell RNA-seq
87
RNA microarray
28
snATAC-seq
27
WGBS
25
pCHi-C
16
small RNA-seq
11
RRBS
5
Hi-C
4
MeRIP-seq
3
snDrop-seq
1
DNase-seq
Assay category
1223
Transcription
523
DNA binding
249
DNA accessibility
38
DNA methylation
5
3D chromatin structure
Target of assay
316
histone modification
315
histone
216
narrow histone mark
180
control
99
broad histone mark
29
transcription factor
8
RNA binding protein
2
nucleotide modification
Date released
545
February, 2021
262
August, 2017
226
August, 2021
193
May, 2020
188
October, 2019
120
July, 2018
74
July, 2019
66
May, 2022
60
February, 2023
47
September, 2023
40
May, 2021
40
May, 2024
39
November, 2019
33
March, 2020
29
October, 2018
25
November, 2017
23
February, 2020
20
May, 2019
19
April, 2020
17
October, 2017
16
April, 2019
15
May, 2023
12
December, 2017
9
November, 2018
8
January, 2021
6
April, 2018
6
September, 2017
4
December, 2018
4
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
1
January, 2019
Available data
1873
bam
1745
bigWig
1072
tsv
922
bed narrowPeak
bigBed narrowPeak
377
fastq
238
tagAlign
209
bed broadPeak
201
bed bed3+
bigBed broadPeak
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2154
Homo sapiens
Biosample type
2157
tissue
969
primary cell
373
in vitro differentiated cells
233
cell line
10
stem cell
Organ
537
connective tissue
478
adipose tissue
440
pancreas
311
liver
222
heart
211
kidney
158
bone element
149
brain
70
blood vessel
70
vasculature
53
eye
artery
42
musculature of body
38
limb
20
lung
17
nerve
16
skeleton
15
epithelium
12
spleen
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2060
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1267
GRCh38
1249
hg19
Lab
1807
AMP-T2D consortium
141
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
90
inconsistent ontology term
9
audit script error
Audit category:
23
missing controlled_by
files.file_type!
bigBed broadPeak
bigBed narrowPeak
hic
organ_slims!
artery
BIOSAMPLE
ASSAY
2157 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
small RNA-seq
RRBS
Hi-C
MeRIP-seq
snDrop-seq
DNase-seq
tissue
islet of Langerhans
292
71
68
6
7
4
1
1
4
adipose tissue
382
1
2
3
1
liver
167
107
20
1
3
1
1
1
kidney
49
9
75
64
6
1
bone element
84
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