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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1031
total RNA-seq
907
ChIP-seq
256
ATAC-seq
180
single cell RNA-seq
87
RNA microarray
28
snATAC-seq
27
WGBS
25
pCHi-C
16
small RNA-seq
11
RRBS
5
Hi-C
4
FAIRE-seq
3
snDrop-seq
2
DNase-seq
Assay category
1227
Transcription
907
DNA binding
290
DNA accessibility
38
DNA methylation
5
3D chromatin structure
Target of assay
628
histone modification
627
histone
324
narrow histone mark
303
broad histone mark
185
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
545
February, 2021
284
August, 2017
237
October, 2019
228
August, 2021
193
May, 2020
120
July, 2018
115
May, 2019
95
February, 2023
82
November, 2017
80
April, 2019
77
July, 2019
74
October, 2018
66
May, 2022
48
December, 2017
47
September, 2023
40
May, 2021
40
May, 2024
39
November, 2019
33
March, 2020
25
February, 2020
23
October, 2017
19
April, 2020
17
November, 2018
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
March, 2019
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1906
bam
1772
bigWig
1076
tsv
984
bed narrowPeak
561
bigBed narrowPeak
376
fastq
238
tagAlign
212
bed broadPeak
205
bed bed3+
bigBed broadPeak
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
10
bedpe bed3+
hic
6
csv
5
bed bed3
1
tagAlign bed3+
Organism
2573
Homo sapiens
Biosample type
2582
tissue
1028
primary cell
595
cell line
389
in vitro differentiated cells
10
stem cell
Organ
545
connective tissue
488
pancreas
486
adipose tissue
357
liver
283
heart
238
brain
230
kidney
158
bone element
127
blood vessel
127
vasculature
86
limb
69
artery
53
eye
48
musculature of body
41
nerve
24
spleen
20
lung
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2485
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1681
GRCh38
1582
hg19
Lab
2240
AMP-T2D consortium
141
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
2
Bing Ren, UCSD
1
Stephen Parker, UMich
Audit category:
90
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
files.file_type!
bigBed broadPeak
hic
month_released!
March, 2019
November, 2020
BIOSAMPLE
ASSAY
2582 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
small RNA-seq
RRBS
Hi-C
FAIRE-seq
snDrop-seq
DNase-seq
tissue
islet of Langerhans
292
71
64
6
7
4
1
1
1
1
adipose tissue
382
2
3
3
1
liver
167
145
20
1
3
1
1
1
kidney
49
27
75
64
6
1
1
bone element
84
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