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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
857
ChIP-seq
839
total RNA-seq
185
ATAC-seq
169
single cell RNA-seq
87
RNA microarray
27
WGBS
24
pCHi-C
22
snATAC-seq
16
small RNA-seq
15
Hi-C
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
2
DNase-seq
Assay category
1024
Transcription
857
DNA binding
213
DNA accessibility
38
DNA methylation
15
3D chromatin structure
Target of assay
601
histone modification
600
histone
303
broad histone mark
297
narrow histone mark
164
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
284
August, 2017
238
October, 2019
May, 2020
120
July, 2018
115
May, 2019
101
August, 2021
95
February, 2023
82
November, 2017
80
April, 2019
77
July, 2019
74
October, 2018
66
May, 2022
48
December, 2017
47
September, 2023
40
May, 2021
40
May, 2024
40
November, 2019
39
March, 2020
25
February, 2020
23
October, 2017
19
April, 2020
17
November, 2018
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
1
May, 2023
Available data
1714
bam
1602
bigWig
932
tsv
893
bed narrowPeak
561
bigBed narrowPeak
377
fastq
213
bed broadPeak
205
bed bed3+
188
tagAlign
bigBed broadPeak
100
txt
25
bed bedMethyl
25
bigBed bedMethyl
10
bedpe bed3+
10
hic
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2256
Homo sapiens
Biosample type
2265
tissue
892
primary cell
602
cell line
393
in vitro differentiated cells
10
stem cell
Organ
545
connective tissue
499
pancreas
486
adipose tissue
286
heart
238
brain
165
liver
158
bone element
128
blood vessel
128
vasculature
89
kidney
86
limb
69
artery
53
eye
50
musculature of body
41
nerve
24
spleen
20
lung
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2168
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1446
GRCh38
1424
hg19
Lab
2055
AMP-T2D consortium
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
90
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
files.file_type!
bigBed broadPeak
lab.title!
Katalin Susztak, Upenn
month_released!
May, 2020
organ_slims!
small intestine
BIOSAMPLE
ASSAY
2265 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
RNA microarray
WGBS
pCHi-C
snATAC-seq
small RNA-seq
Hi-C
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
DNase-seq
tissue
islet of Langerhans
71
292
68
6
4
7
3
1
1
4
1
adipose tissue
2
382
3
3
1
liver
95
24
20
1
3
1
1
1
1
bone element
84
kidney
27
53
1
1
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