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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
123
ChIP-seq
92
single cell RNA-seq
15
total RNA-seq
8
WGBS
4
ATAC-seq
3
Hi-C
3
pCHi-C
1
RRBS
1
small RNA-seq
Assay category
123
DNA binding
108
Transcription
9
DNA methylation
4
DNA accessibility
3
3D chromatin structure
Target of assay
95
histone
95
histone modification
57
broad histone mark
38
narrow histone mark
16
control
12
transcription factor
10
RNA binding protein
Date released
92
August, 2021
57
April, 2019
40
May, 2024
February, 2023
21
May, 2019
20
July, 2019
8
October, 2019
7
March, 2020
3
February, 2020
2
May, 2021
Available data
157
bigWig
138
bed narrowPeak
132
bam
111
tsv
88
bigBed narrowPeak
27
bed bed3+
27
bed broadPeak
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
3
bedpe bed3+
3
hic
Organism
250
Homo sapiens
Biosample type
250
tissue
66
cell line
10
primary cell
1
in vitro differentiated cells
Organ
544
connective tissue
485
adipose tissue
481
pancreas
358
liver
250
heart
237
brain
231
kidney
150
bone element
93
blood vessel
93
vasculature
86
limb
50
musculature of body
41
nerve
34
artery
24
spleen
22
eye
20
lung
8
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
epithelium
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
250
AMP
Genome assembly (visualization)
129
GRCh38
88
hg19
Lab
210
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
files.file_type!
bigBed broadPeak
month_released!
February, 2023
organ_slims!
embryo
BIOSAMPLE
ASSAY
250 results
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ChIP-seq
single cell RNA-seq
total RNA-seq
WGBS
ATAC-seq
Hi-C
pCHi-C
RRBS
small RNA-seq
tissue
heart left ventricle
35
18
3
4
2
1
1
1
left cardiac atrium
40
18
heart right ventricle
13
17
1
2
1
1
right cardiac atrium
6
18
1
1
heart
14
4
1
1
1
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