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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
880
ChIP-seq
861
total RNA-seq
185
ATAC-seq
116
single cell RNA-seq
85
RNA microarray
27
WGBS
25
pCHi-C
22
snATAC-seq
15
Hi-C
15
small RNA-seq
9
RRBS
4
MeRIP-seq
3
FAIRE-seq
2
DNase-seq
Assay category
992
Transcription
880
DNA binding
212
DNA accessibility
36
DNA methylation
15
3D chromatin structure
Target of assay
608
histone modification
607
histone
314
narrow histone mark
293
broad histone mark
181
control
93
transcription factor
27
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
537
February, 2021
284
August, 2017
234
October, 2019
193
May, 2020
July, 2018
115
May, 2019
101
August, 2021
95
February, 2023
82
November, 2017
74
October, 2018
72
July, 2019
66
May, 2022
57
April, 2019
48
December, 2017
40
March, 2020
40
May, 2021
40
May, 2024
40
November, 2019
25
February, 2020
23
October, 2017
19
April, 2020
17
November, 2018
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
2
January, 2018
1
August, 2022
1
May, 2023
Available data
1693
bam
1565
bigWig
948
tsv
831
bed narrowPeak
474
bigBed narrowPeak
375
fastq
238
tagAlign
145
bed broadPeak
137
bed bed3+
bigBed broadPeak
95
txt
23
bed bedMethyl
23
bigBed bedMethyl
10
bedpe bed3+
10
hic
5
bed bed3
1
bedpe
1
csv
1
tagAlign bed3+
Organism
2240
Homo sapiens
Biosample type
2249
tissue
964
primary cell
584
cell line
393
in vitro differentiated cells
10
stem cell
Organ
545
connective tissue
486
adipose tissue
379
pancreas
358
liver
286
heart
238
brain
kidney
158
bone element
128
blood vessel
128
vasculature
86
limb
69
artery
53
eye
50
musculature of body
41
nerve
24
spleen
20
lung
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2199
AMP
31
T1D
19
LungMap
Genome assembly (visualization)
1470
GRCh38
1453
hg19
Lab
2086
AMP-T2D consortium
52
Kyle Gaulton, UCSD
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
90
inconsistent ontology term
27
inconsistent control
2
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
files.file_type!
bigBed broadPeak
month_released!
July, 2018
organ_slims!
kidney
pericardium
BIOSAMPLE
ASSAY
2249 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
RNA microarray
WGBS
pCHi-C
snATAC-seq
Hi-C
small RNA-seq
RRBS
MeRIP-seq
FAIRE-seq
DNase-seq
tissue
adipose tissue
2
382
3
3
1
liver
145
167
20
1
3
1
1
1
1
islet of Langerhans
71
172
68
6
4
7
3
1
4
1
1
bone element
84
heart left ventricle
35
3
2
18
4
1
1
1
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