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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
987
total RNA-seq
698
ChIP-seq
251
ATAC-seq
180
single cell RNA-seq
87
RNA microarray
28
snATAC-seq
22
pCHi-C
15
WGBS
12
Hi-C
5
RRBS
4
MeRIP-seq
3
snDrop-seq
2
DNase-seq
2
FAIRE-seq
Assay category
1167
Transcription
698
DNA binding
283
DNA accessibility
20
DNA methylation
12
3D chromatin structure
Target of assay
444
histone modification
443
histone
233
broad histone mark
210
narrow histone mark
162
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
284
August, 2017
229
August, 2021
193
May, 2020
152
October, 2019
120
July, 2018
94
February, 2023
87
May, 2019
80
April, 2019
74
October, 2018
July, 2019
66
May, 2022
48
December, 2017
47
September, 2023
40
May, 2021
40
May, 2024
40
November, 2019
37
March, 2020
19
April, 2020
17
November, 2018
15
May, 2023
13
February, 2020
8
January, 2021
7
December, 2018
7
January, 2019
7
October, 2017
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1627
bam
1517
bigWig
1013
tsv
786
bed narrowPeak
444
bigBed narrowPeak
365
fastq
178
bed bed3+
177
bed broadPeak
157
txt
bigBed broadPeak
120
tagAlign
64
xls
11
bed bedMethyl
11
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
4
bed bed3
1
bedpe
Organism
2287
Homo sapiens
Biosample type
2296
tissue
1005
primary cell
603
cell line
393
in vitro differentiated cells
10
stem cell
Organ
535
connective tissue
493
pancreas
476
adipose tissue
350
liver
266
heart
brain
227
kidney
158
bone element
121
blood vessel
121
vasculature
81
limb
68
artery
53
eye
43
musculature of body
41
nerve
24
spleen
20
lung
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
large intestine
1
lymph node
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2199
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1455
GRCh38
1419
hg19
Lab
1944
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
87
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
22
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
files.file_type!
bigBed broadPeak
month_released!
July, 2019
organ_slims!
brain
large intestine
BIOSAMPLE
ASSAY
2296 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
RNA microarray
snATAC-seq
pCHi-C
WGBS
Hi-C
RRBS
MeRIP-seq
snDrop-seq
DNase-seq
FAIRE-seq
tissue
islet of Langerhans
292
71
67
6
7
4
3
4
1
1
adipose tissue
382
2
3
1
3
liver
165
145
20
1
1
3
1
1
kidney
49
27
75
64
6
1
bone element
84
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