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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
751
ChIP-seq
572
total RNA-seq
242
ATAC-seq
180
single cell RNA-seq
28
snATAC-seq
24
pCHi-C
21
WGBS
16
Hi-C
14
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
2
DNase-seq
2
RNA microarray
Assay category
766
Transcription
751
DNA binding
276
DNA accessibility
32
DNA methylation
16
3D chromatin structure
Target of assay
525
histone modification
524
histone
283
narrow histone mark
241
broad histone mark
151
control
77
transcription factor
23
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
236
October, 2019
228
August, 2021
227
August, 2017
193
May, 2020
120
July, 2018
115
May, 2019
86
February, 2023
November, 2017
80
April, 2019
67
July, 2019
66
May, 2022
51
October, 2018
48
December, 2017
47
September, 2023
40
May, 2021
40
May, 2024
39
March, 2020
39
November, 2019
23
February, 2020
22
October, 2017
19
April, 2020
17
November, 2018
14
May, 2023
9
February, 2021
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
1
August, 2022
1
January, 2018
Available data
1332
bam
1234
bigWig
905
bed narrowPeak
619
tsv
494
bigBed narrowPeak
334
fastq
204
bed broadPeak
199
bed bed3+
bigBed broadPeak
164
tagAlign
69
txt
64
xls
23
bed bedMethyl
23
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
1
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1866
Homo sapiens
Biosample type
1874
tissue
1002
primary cell
346
cell line
297
in vitro differentiated cells
9
stem cell
Organ
connective tissue
499
pancreas
486
adipose tissue
358
liver
286
heart
231
kidney
bone element
156
brain
128
blood vessel
128
vasculature
86
limb
69
artery
53
eye
50
musculature of body
41
nerve
24
spleen
20
lung
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1777
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1140
GRCh38
1097
hg19
Lab
1522
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
9
audit script error
5
inconsistent ontology term
Audit category:
14
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
files.file_type!
bigBed broadPeak
month_released!
November, 2017
organ_slims!
bone element
connective tissue
BIOSAMPLE
ASSAY
1874 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
pCHi-C
WGBS
Hi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
DNase-seq
RNA microarray
tissue
islet of Langerhans
70
292
68
6
7
4
3
1
1
4
1
liver
145
167
20
1
1
3
1
1
1
kidney
27
49
75
64
6
1
1
1
heart left ventricle
35
3
2
18
1
4
1
1
left cardiac atrium
40
18
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