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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
86
ChIP-seq
9
ATAC-seq
7
total RNA-seq
4
Hi-C
3
WGBS
1
pCHi-C
Assay category
86
DNA binding
9
DNA accessibility
7
Transcription
4
3D chromatin structure
3
DNA methylation
Target of assay
55
histone
55
histone modification
38
broad histone mark
25
control
17
narrow histone mark
6
transcription factor
3
other context
3
other post-translational modification
Date released
65
October, 2019
8
November, 2018
7
December, 2018
7
January, 2019
7
May, 2019
6
February, 2021
5
July, 2019
3
February, 2020
1
March, 2020
1
October, 2017
Available data
138
bam
107
bigWig
106
bed narrowPeak
97
bigBed narrowPeak
37
bed bed3+
37
bed broadPeak
bigBed broadPeak
24
fastq
8
tsv
3
bed bedMethyl
3
bigBed bedMethyl
Organism
110
Homo sapiens
Biosample type
110
tissue
Organ
544
connective tissue
485
adipose tissue
460
pancreas
358
liver
286
heart
238
brain
231
kidney
158
bone element
128
blood vessel
128
vasculature
86
limb
69
artery
53
eye
50
musculature of body
41
nerve
24
spleen
20
lung
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
110
AMP
Genome assembly (visualization)
75
GRCh38
73
hg19
Lab
110
AMP-T2D consortium
files.file_type!
bigBed broadPeak
month_released!
November, 2019
BIOSAMPLE
ASSAY
110 results
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ChIP-seq
ATAC-seq
total RNA-seq
Hi-C
WGBS
pCHi-C
tissue
tibial nerve
35
1
5
tibial artery
23
1
1
spleen
20
1
2
1
muscle of leg
7
1
gastrocnemius medialis
1
4
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