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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1016
total RNA-seq
751
ChIP-seq
213
ATAC-seq
87
RNA microarray
87
single cell RNA-seq
28
snATAC-seq
22
pCHi-C
19
WGBS
15
small RNA-seq
13
Hi-C
10
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
2
DNase-seq
Assay category
1118
Transcription
751
DNA binding
247
DNA accessibility
29
DNA methylation
13
3D chromatin structure
Target of assay
521
histone modification
520
histone
284
narrow histone mark
236
broad histone mark
168
control
82
transcription factor
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
282
August, 2017
230
October, 2019
193
May, 2020
137
August, 2021
120
July, 2018
92
May, 2019
82
November, 2017
66
May, 2022
63
October, 2018
59
February, 2023
57
July, 2019
47
September, 2023
46
December, 2017
40
November, 2019
38
May, 2021
33
March, 2020
October, 2017
22
April, 2019
22
February, 2020
19
April, 2020
17
November, 2018
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1742
bam
1584
bigWig
965
tsv
783
bed narrowPeak
452
bigBed narrowPeak
345
fastq
224
tagAlign
182
bed broadPeak
176
bed bed3+
157
txt
bigBed broadPeak
64
xls
18
bed bedMethyl
18
bigBed bedMethyl
8
hic
7
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2265
Homo sapiens
Biosample type
2274
tissue
1025
primary cell
476
cell line
381
in vitro differentiated cells
10
stem cell
Organ
539
connective tissue
486
pancreas
480
adipose tissue
356
liver
heart
230
kidney
222
brain
158
bone element
125
blood vessel
125
vasculature
86
limb
68
artery
53
eye
50
musculature of body
41
nerve
23
spleen
20
lung
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2177
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1488
GRCh38
1477
hg19
Lab
1963
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
Audit category:
90
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
21
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
files.file_type!
bigBed broadPeak
month_released!
October, 2017
organ_slims!
heart
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
2274 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
RNA microarray
single cell RNA-seq
snATAC-seq
pCHi-C
WGBS
small RNA-seq
Hi-C
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
DNase-seq
tissue
islet of Langerhans
292
69
67
6
7
4
3
1
1
4
1
adipose tissue
382
2
3
1
3
liver
167
144
20
1
1
3
1
1
1
kidney
49
26
75
64
6
1
1
1
bone element
84
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