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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
74
ChIP-seq
38
ATAC-seq
7
total RNA-seq
6
single cell RNA-seq
2
WGBS
1
Hi-C
1
pCHi-C
Assay category
74
DNA binding
38
DNA accessibility
13
Transcription
2
DNA methylation
1
3D chromatin structure
Target of assay
55
histone
55
histone modification
36
broad histone mark
19
narrow histone mark
16
control
3
RNA binding protein
3
transcription factor
Date released
50
May, 2019
35
February, 2023
25
October, 2019
7
July, 2019
6
August, 2021
3
February, 2020
3
March, 2020
Available data
100
bed narrowPeak
87
bam
70
bigWig
62
bigBed narrowPeak
14
tsv
5
bed bed3+
5
bed broadPeak
bigBed broadPeak
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hic
Organism
129
Homo sapiens
Biosample type
129
tissue
66
cell line
25
primary cell
Organ
545
connective tissue
499
pancreas
486
adipose tissue
358
liver
286
heart
238
brain
231
kidney
158
bone element
128
blood vessel
128
vasculature
86
limb
69
artery
53
eye
50
musculature of body
41
nerve
24
spleen
20
lung
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
129
AMP
Genome assembly (visualization)
100
GRCh38
65
hg19
Lab
129
AMP-T2D consortium
files.file_type!
bigBed broadPeak
BIOSAMPLE
ASSAY
129 results
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ChIP-seq
ATAC-seq
total RNA-seq
single cell RNA-seq
WGBS
Hi-C
pCHi-C
tissue
coronary artery
5
36
1
tibial artery
23
1
1
aorta
13
1
4
2
1
1
thoracic aorta
16
1
2
ascending aorta
16
2
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