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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
934
total RNA-seq
316
ChIP-seq
230
ATAC-seq
174
single cell RNA-seq
87
RNA microarray
28
snATAC-seq
25
pCHi-C
16
Hi-C
16
small RNA-seq
12
WGBS
6
RRBS
4
MeRIP-seq
3
snDrop-seq
Assay category
1124
Transcription
316
DNA binding
258
DNA accessibility
18
DNA methylation
16
3D chromatin structure
Target of assay
209
histone
209
histone modification
172
narrow histone mark
103
control
37
broad histone mark
6
RNA binding protein
6
transcription factor
2
nucleotide modification
Date released
545
February, 2021
229
August, 2021
195
October, 2019
193
May, 2020
118
July, 2018
August, 2017
95
February, 2023
75
July, 2019
47
September, 2023
42
May, 2022
40
March, 2020
40
May, 2021
40
May, 2024
40
November, 2019
25
February, 2020
25
November, 2017
22
May, 2019
19
April, 2020
16
April, 2019
15
May, 2023
8
January, 2021
6
October, 2017
4
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
2
October, 2018
1
August, 2022
Available data
1737
bam
1594
bigWig
987
tsv
918
bed narrowPeak
bigBed narrowPeak
fastq
187
bed broadPeak
179
bed bed3+
179
tagAlign
176
bigBed broadPeak
157
txt
64
xls
20
bed bedMethyl
20
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1849
Homo sapiens
Biosample type
1851
tissue
613
primary cell
237
in vitro differentiated cells
227
cell line
6
stem cell
Organ
463
connective tissue
404
adipose tissue
253
pancreas
252
liver
225
heart
212
kidney
158
bone element
145
brain
71
blood vessel
71
vasculature
53
eye
48
artery
38
limb
20
lung
18
musculature of body
17
nerve
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
1754
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1143
GRCh38
1069
hg19
Lab
1525
AMP-T2D consortium
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
28
Kyle Gaulton, UCSD
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
90
inconsistent ontology term
9
audit script error
files.file_type!
bigBed narrowPeak
fastq
month_released!
August, 2017
BIOSAMPLE
ASSAY
1851 results
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total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
RNA microarray
snATAC-seq
pCHi-C
Hi-C
small RNA-seq
WGBS
RRBS
MeRIP-seq
snDrop-seq
tissue
adipose tissue
382
2
1
islet of Langerhans
195
23
48
7
4
3
1
4
liver
167
55
20
1
1
1
1
kidney
49
9
75
64
6
1
1
bone element
84
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