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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
748
total RNA-seq
454
ChIP-seq
174
single cell RNA-seq
131
ATAC-seq
87
RNA microarray
24
pCHi-C
23
WGBS
17
snATAC-seq
14
small RNA-seq
12
Hi-C
9
RRBS
3
snDrop-seq
1
DNase-seq
Assay category
936
Transcription
454
DNA binding
149
DNA accessibility
32
DNA methylation
12
3D chromatin structure
Target of assay
286
histone modification
285
histone
200
narrow histone mark
146
control
85
broad histone mark
22
transcription factor
6
RNA binding protein
Date released
545
February, 2021
193
May, 2020
192
October, 2019
163
August, 2021
129
August, 2017
77
February, 2023
69
July, 2019
47
September, 2023
42
May, 2022
40
May, 2024
31
March, 2020
25
November, 2017
24
February, 2020
21
May, 2019
19
April, 2020
18
October, 2018
16
April, 2019
15
May, 2023
December, 2017
12
October, 2017
5
November, 2018
4
December, 2018
3
December, 2019
3
May, 2021
2
January, 2018
1
January, 2019
1
November, 2019
Available data
1430
bam
1363
bigWig
825
bed narrowPeak
801
tsv
bigBed narrowPeak
222
tagAlign
193
bed broadPeak
178
bed bed3+
170
bigBed broadPeak
151
txt
116
fastq
xls
19
bed bedMethyl
19
bigBed bedMethyl
8
hic
7
bedpe bed3+
6
csv
5
bed bed3
1
tagAlign bed3+
Organism
1695
Homo sapiens
Biosample type
1697
tissue
655
primary cell
345
in vitro differentiated cells
222
cell line
7
stem cell
Organ
537
connective tissue
478
adipose tissue
pancreas
300
liver
225
heart
158
bone element
149
brain
148
kidney
71
blood vessel
71
vasculature
53
eye
48
artery
44
musculature of body
38
limb
20
lung
17
nerve
16
skeleton
15
epithelium
12
spleen
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1630
AMP
47
KPMP
19
LungMap
1
T1D
Genome assembly (visualization)
914
GRCh38
909
hg19
Lab
1472
AMP-T2D consortium
78
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
1
Kyle Gaulton, UCSD
Audit category:
90
inconsistent ontology term
8
audit script error
Audit category:
13
missing controlled_by
files.file_type!
bigBed narrowPeak
xls
month_released!
December, 2017
organ_slims!
pancreas
BIOSAMPLE
ASSAY
1697 results
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Clear Filters
total RNA-seq
ChIP-seq
single cell RNA-seq
ATAC-seq
RNA microarray
pCHi-C
WGBS
snATAC-seq
small RNA-seq
Hi-C
RRBS
snDrop-seq
DNase-seq
tissue
adipose tissue
382
1
2
1
3
liver
167
98
1
20
1
3
1
1
1
kidney
49
9
64
11
6
1
1
bone element
84
bone tissue
58
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